View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9334_low_11 (Length: 228)
Name: NF9334_low_11
Description: NF9334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9334_low_11 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 15658542 - 15658734
Alignment:
| Q |
18 |
agagctgtttgggagaaatggggttgcacaattatgactgatggttggactgataggaggagaagaactatattgaattttttggtacgtagtccaaagg |
117 |
Q |
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| T |
15658542 |
agagctgtttgggagaaatgtggttgcataattatgactgatggttggactgatagaaggagaagaactatattgaattttttggtacatagtccaaagg |
15658641 |
T |
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| Q |
118 |
gaacttttattttaaagtctattgatgcatctgacattaccaaaattgctgataaattttttaagatgattgatgatgttgttgaagagattg |
210 |
Q |
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| T |
15658642 |
gaactttttttttaaagtctattgatccatctgacattaccaaaactgctgataaaatttttaagatgattgatgatgttgttgaagagattg |
15658734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 246020 - 245828
Alignment:
| Q |
18 |
agagctgtttgggagaaatggggttgcacaattatgactgatggttggactgataggaggagaagaactatattgaattttttggtacgtagtccaaagg |
117 |
Q |
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| T |
246020 |
agagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaactatattgaactttttggtacatagtccaaagg |
245921 |
T |
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| Q |
118 |
gaac-ttttattttaaagtctattgatgcatctgacattaccaaaattgctgataaattttttaagatgattgatgatgttgttgaagagattg |
210 |
Q |
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| T |
245920 |
gaacttttttttttaaagtctattga-gcatcttacattaccaaaactcctgataaaatttttaagatgattgatgatgttgttgaagagattg |
245828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 244473 - 244671
Alignment:
| Q |
18 |
agagctgtttgggagaaatggggttgcacaattatgactgatggttggactgataggaggagaagaactatattgaattttttggtacgtagtccaaagg |
117 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
244473 |
agagctgtttggaagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaactatattgaattttttggtacatagtccaaagg |
244572 |
T |
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| Q |
118 |
gaac-----ttttattttaaagtctattgatgcatctgacattaccaaaattgctgataaa-ttttttaagatgattgatgatgttgttgaagagattg |
210 |
Q |
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| T |
244573 |
gagcttttttttttttttaaagtctattgatgcatctgacattaccaaaactgctaataaatttttttaagatgattgatgatgttgttgaaaagattg |
244671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 4377385 - 4377345
Alignment:
| Q |
166 |
ctgataaattttttaagatgattgatgatgttgttgaagag |
206 |
Q |
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| T |
4377385 |
ctgagaaattgtttaagatgatggatgatgttgttgaagag |
4377345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 4384958 - 4384918
Alignment:
| Q |
166 |
ctgataaattttttaagatgattgatgatgttgttgaagag |
206 |
Q |
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| T |
4384958 |
ctgagaaattgtttaagatgatggatgatgttgttgaagag |
4384918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 4390068 - 4390028
Alignment:
| Q |
166 |
ctgataaattttttaagatgattgatgatgttgttgaagag |
206 |
Q |
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| T |
4390068 |
ctgagaaattgtttaagatgatggatgatgttgttgaagag |
4390028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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