View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9334_low_3 (Length: 343)
Name: NF9334_low_3
Description: NF9334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9334_low_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 47634844 - 47635176
Alignment:
| Q |
11 |
cacagagactatcatcacatgcagactgttccttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctc |
110 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47634844 |
cacagagactatcatcagatgcagactgctccttatccaaacaagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctc |
47634943 |
T |
|
| Q |
111 |
caccgtggctacaaggcctggcgttttcatgatgaacagcctaaatatcacaaaccaggagacattcatgcctttgttgtttgatacaatgaacaaaaca |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47634944 |
caccatggctacaaggcctggcgttttcatgatgaacagcctaaatatcacaaaccaggagacattcatgcctttgttgtttgatacaatgaacaaaaca |
47635043 |
T |
|
| Q |
211 |
gcagataatgctgcaaattcttctgttggtgctaagaaatacgcaacaaaggaagctagaatctctggttttcagacactttattgtatggctcagtgta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47635044 |
gcagataatgctgcaaattcttctgttggtgctaagaaatacgcaacaaaggaagctagcatctctggttttcagacactttattgtatggctcagtgta |
47635143 |
T |
|
| Q |
311 |
cagaggatttatcacagcaagattgcagaacgt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47635144 |
cagaggatttatcacagcaagattgcagaacgt |
47635176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 9674764 - 9674699
Alignment:
| Q |
278 |
gttttcagacactttattgtatggctcagtgtacagaggatttatcacagcaagattgcagaacgt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9674764 |
gttttcagacactttattgtatggctcagtgtacagaggatttatcacagcaagattgcagaacgt |
9674699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 20128262 - 20128155
Alignment:
| Q |
43 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccgtggctacaaggcctggcgttttcatga |
142 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| || ||||| | ||||| ||||| || | |
|
|
| T |
20128262 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtttctacacgtcctggtgtttttataa |
20128163 |
T |
|
| Q |
143 |
tgaacagc |
150 |
Q |
| |
|
|||||||| |
|
|
| T |
20128162 |
tgaacagc |
20128155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 22204608 - 22204715
Alignment:
| Q |
43 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccgtggctacaaggcctggcgttttcatga |
142 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| || ||||| | ||||| ||||| || | |
|
|
| T |
22204608 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtttctacacgtcctggtgtttttataa |
22204707 |
T |
|
| Q |
143 |
tgaacagc |
150 |
Q |
| |
|
|||||||| |
|
|
| T |
22204708 |
tgaacagc |
22204715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University