View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9334_low_6 (Length: 321)
Name: NF9334_low_6
Description: NF9334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9334_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 25286446 - 25286593
Alignment:
| Q |
24 |
atgaagtactgacaaagtcccaatagccaaaagtcgctgaatgggatcaaaagcgagaactgaagaagaagatggaatgccatagtgaagcacaattctt |
123 |
Q |
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| T |
25286446 |
atgaagtactgacaaagtcccaatagccaaaagtcgctgaatgggatcaaaagcgagaactgaagaagaagatggaatgccatagtgaatcacaattctt |
25286545 |
T |
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| Q |
124 |
ggatccaattcagttgattgtaaactaccttgctgctgaaacttgtgc |
171 |
Q |
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| T |
25286546 |
ggatccaattcagttgattgtaaactaccttgctgctgaaacttgtgc |
25286593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 25286671 - 25286727
Alignment:
| Q |
249 |
catggtttttatttgtttcttacgttgtaatggtgttgcacagctttgtgtaacaat |
305 |
Q |
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| T |
25286671 |
catggtttttatttgtttcttacgttgtaatggtgttgcacagctttgtgtaacaat |
25286727 |
T |
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