View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9334_low_9 (Length: 237)
Name: NF9334_low_9
Description: NF9334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9334_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 50364317 - 50364100
Alignment:
| Q |
1 |
atcatagcaaccttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataag |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50364317 |
atcatagcgaccttagtggttgaagtgggtatcttagctccattgataatgtgggatat--ttggatctctcgcaacaaatttatttttgagggaataag |
50364220 |
T |
|
| Q |
101 |
tcatgtgaaataccatattacaacatctatctttatttatctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgt |
200 |
Q |
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||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
50364219 |
tcatgtgaaataccagatcacaacatctatttttatttatctacaagtttccaagcagacgtttgaaagtccagcctcctgctccactcgaacaacttgt |
50364120 |
T |
|
| Q |
201 |
gaggtgtgttggcataaatg |
220 |
Q |
| |
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||||||||||| |||||||| |
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| T |
50364119 |
gaggtgtgttgacataaatg |
50364100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 10794930 - 10795133
Alignment:
| Q |
13 |
ttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaata |
112 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| || || | |||| || |
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| T |
10794930 |
ttagtggatgaagtgggtatcttagctccattgataatgtggaatat--ttggatctctcgcaacaaatttatttttaagggaacaactcctatgaagta |
10795027 |
T |
|
| Q |
113 |
ccatattacaacatctatctttatttatctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgaggtgtgttgg |
212 |
Q |
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| | || | |||||||||||||| | | |||||||||||||||||| |||| | |||| | ||||| |||| |||||||||| |||||||||||||| |
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| T |
10795028 |
ctagatcataacatctatctttactcagctacaagtttccaagcaggcattgggaagtccaacctcccactcccatcgaacaactcgtgaggtgtgttgg |
10795127 |
T |
|
| Q |
213 |
cataaa |
218 |
Q |
| |
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||||| |
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| T |
10795128 |
aataaa |
10795133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 41405456 - 41405605
Alignment:
| Q |
9 |
aaccttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtga |
108 |
Q |
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||||||||||| || ||||||||||||| ||| |||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
41405456 |
aaccttagtggatggagtgggtatcttagctctattgataacgtggaatat--ttggatctctcgcaacaaatttatttttaagggaataactcatgtga |
41405553 |
T |
|
| Q |
109 |
aataccatattacaacatctatctttatttatctacaagtttccaagcagac |
160 |
Q |
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| T |
41405554 |
agtaccacatcataacatctaactttactcaactacaggtttccaagcagac |
41405605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 50076299 - 50076502
Alignment:
| Q |
13 |
ttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaata |
112 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| || || || | |||| || |
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| T |
50076299 |
ttagtggatgaagtgggtatcttagctccattgataatgtgg--aatatttgaatctctcgcaacaaatttatttttaaggaaacaactcctatgaagta |
50076396 |
T |
|
| Q |
113 |
ccatattacaacatctatctttatttatctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgaggtgtgttgg |
212 |
Q |
| |
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| | || | |||||||||||||| | | |||||||||||||||||| |||| | |||| | ||||| ||| |||||||||| ||||| |||||||| |
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| T |
50076397 |
ctagatcataacatctatctttactcagctacaagtttccaagcaggcattgggaagtccaacctcccactctcatcgaacaactcgtgagatgtgttgg |
50076496 |
T |
|
| Q |
213 |
cataaa |
218 |
Q |
| |
|
||||| |
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|
| T |
50076497 |
aataaa |
50076502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 25584082 - 25584273
Alignment:
| Q |
10 |
accttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaa |
109 |
Q |
| |
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||||||| ||| ||||||||||||||| ||||||||||||||| | |||| |||||||||||||| |||||||| ||| ||||||||| | |||||| |
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| T |
25584082 |
accttagcggtcgaagtgggtatcttagctccattgataatgttgaatat--ttggatctctcgcagtaaatttatctttcagggaataacttttgtgaa |
25584179 |
T |
|
| Q |
110 |
ataccatattacaacatctatctttatttatctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgag |
203 |
Q |
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| T |
25584180 |
gtaccagatcacaacatctatatttacttggctacaagtttcgaagcagacgtttggaagtccaacctctaactcccatcaaacaacttgtgag |
25584273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 34540509 - 34540598
Alignment:
| Q |
5 |
tagcaaccttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaa |
96 |
Q |
| |
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|||||| |||||||| |||||||| ||||||| ||| ||||||||| | |||| |||||||||||| ||||||||||||||| |||||| |
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| T |
34540509 |
tagcaatcttagtgggtgaagtggatatcttagctcggttgataatgaagaatat--ttggatctctcgtaacaaatttattttttagggaa |
34540598 |
T |
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