View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9335_high_2 (Length: 241)
Name: NF9335_high_2
Description: NF9335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9335_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19438174 - 19437952
Alignment:
| Q |
1 |
cattagagatttcaatttcactatcatcagcatctgctgctaaggctgcaacaacaggaaaccttctttgatttactccaaaggccttcttcaccaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19438174 |
cattagagatttcaatttcactatcatcagcatctgctgctaaggctgtaacaactggaaaccttctttgatttactccaaaggccttcttcaccaatgg |
19438075 |
T |
|
| Q |
101 |
agagaacaccaagcttgaatttatagactcatgttgaagtgttctagacttcaacaatccataactagttgaacatgaaactctttttggtaacagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19438074 |
agagaacaccaagcttgaatttatagactcatgttgaagtgttctagacttcaacaatccataactagttgaacttgaaactctttttggtaacagaaaa |
19437975 |
T |
|
| Q |
201 |
actgaagatatttgaggtctttg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
19437974 |
actgaagatatttgaggtctttg |
19437952 |
T |
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