View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9335_low_4 (Length: 398)

Name: NF9335_low_4
Description: NF9335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9335_low_4
NF9335_low_4
[»] chr2 (8 HSPs)
chr2 (1-240)||(9050128-9050367)
chr2 (45-195)||(38576815-38576964)
chr2 (5-74)||(16576247-16576316)
chr2 (282-341)||(9050400-9050460)
chr2 (103-195)||(25606414-25606506)
chr2 (109-223)||(13712860-13712974)
chr2 (5-73)||(13712757-13712825)
chr2 (5-69)||(35370402-35370466)
[»] chr8 (4 HSPs)
chr8 (5-186)||(32166642-32166819)
chr8 (102-197)||(35574743-35574838)
chr8 (84-156)||(12782463-12782535)
chr8 (5-74)||(29969097-29969165)
[»] chr4 (3 HSPs)
chr4 (19-195)||(25062367-25062544)
chr4 (9-122)||(15131586-15131698)
chr4 (162-229)||(11020075-11020141)
[»] chr6 (2 HSPs)
chr6 (92-223)||(32047194-32047325)
chr6 (1-57)||(32047190-32047246)
[»] chr1 (6 HSPs)
chr1 (5-144)||(44330392-44330531)
chr1 (5-74)||(46080970-46081039)
chr1 (84-222)||(38839577-38839715)
chr1 (5-74)||(68096-68165)
chr1 (5-74)||(10775162-10775231)
chr1 (115-191)||(49897922-49897998)
[»] chr7 (9 HSPs)
chr7 (92-193)||(31171386-31171487)
chr7 (5-193)||(31152738-31152926)
chr7 (19-189)||(42012687-42012855)
chr7 (18-159)||(8900670-8900810)
chr7 (136-231)||(23944088-23944183)
chr7 (5-115)||(23944034-23944144)
chr7 (158-223)||(31152721-31152786)
chr7 (5-74)||(32138893-32138962)
chr7 (5-74)||(34891532-34891601)
[»] chr3 (5 HSPs)
chr3 (5-125)||(39341148-39341267)
chr3 (168-224)||(42091791-42091847)
chr3 (114-223)||(39341219-39341328)
chr3 (6-75)||(54437804-54437873)
chr3 (48-199)||(2562965-2563115)
[»] chr5 (5 HSPs)
chr5 (101-223)||(2243250-2243371)
chr5 (5-70)||(2243323-2243388)
chr5 (142-223)||(14138565-14138646)
chr5 (95-222)||(40483703-40483829)
chr5 (175-223)||(39730313-39730361)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9050128 - 9050367
Alignment:
Q  1 tcatatgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9050128 tcatatgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaagaaaaaattatattgacgagaccaacattatct 9050227  T
Q  101 cttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgc 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9050228 cttgatgaattgagggtaatttacctctaatgactagtaggattcgattatgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgc 9050327  T
Q  201 ttgatatttttaagatgaaaatgacaactaactatagaaa 240  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  9050328 ttgatatttttaagatgaaaatggcaactgactatagaaa 9050367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 195
Target Start/End: Original strand, 38576815 - 38576964
Alignment:
Q  45 atgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttgattaattgagggtaatttacctctaatgactagtaggatt 144  Q
    |||||||||||||||||| |||||||||||   ||| |||||| || |||||| | ||| || ||||| |||||||||||  |||||||| | || ||||    
T  38576815 atgaaaatggtaactgattgtaagaaaaaaccttatcgatgaggcctacattacccctttatgaattg-gggtaatttactcctaatgacaaatatgatt 38576913  T
Q  145 cgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaa 195  Q
     |||| ||  || ||  ||||| |||||| ||||| |||||||||||||||    
T  38576914 tgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatgaa 38576964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 16576316 - 16576247
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    ||||||||||| ||||||||||||||||| |||||||   | ||||||||||| |||| |||||||||||    
T  16576316 atgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaa 16576247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 9050400 - 9050460
Alignment:
Q  282 ggttcaaacatcggactttgtatatattatgcactatc-cttttcagtgacctacgtttac 341  Q
    |||||||||| || |||||||||||||||||||||||| |||| || ||||||||||||||    
T  9050400 ggttcaaacaccgaactttgtatatattatgcactatctctttccactgacctacgtttac 9050460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 25606506 - 25606414
Alignment:
Q  103 tgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaa 195  Q
    |||| ||||||||||||||||||  |||| || ||||||||||| || || ||| ||| ||||||| |||| ||||| ||||||| |||||||    
T  25606506 tgatgaattgagggtaatttacccttaataacaagtaggattcgtttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaa 25606414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 13712860 - 13712974
Alignment:
Q  109 attgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatt 208  Q
    ||||||||||||||| | |||||||| | ||  ||| | || || ||| ||  ||||||| |||| |||||||||||| ||||| |||| | |||| |||    
T  13712860 attgagggtaatttatccctaatgacaaatacaattaggttttggaaccaaagagatgtagatcacatgttaaatgaaggagataaaaaagtttgaaatt 13712959  T
Q  209 tttaagatgaaaatg 223  Q
    |||||||| ||||||    
T  13712960 tttaagataaaaatg 13712974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 13712757 - 13712825
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaa 73  Q
    ||||||||| | | |||| |||||||||| |||||||   ||| |||||||||||||| ||||||||||    
T  13712757 atgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaaaaa 13712825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35370466 - 35370402
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaaga 69  Q
    ||||||||||| ||||| ||||||||||| | |||||   || ||||||||||||||| ||||||    
T  35370466 atgttgaatgaaggagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaaga 35370402  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 32166642 - 32166819
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttg 104  Q
    ||||||||| | ||||||||||||||||| |||||||   ||||||||| ||| |||| |||||||||| |   || |||||| |  ||||| |   |||    
T  32166642 atgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaact---atcgatgag-catacatttttctttg 32166737  T
Q  105 attaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaa 186  Q
    || ||||| | ||||||||||||||||||| |||| ||||||||| || ||| ||  |||||||||||| ||||||||||||    
T  32166738 atgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaa 32166819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 35574743 - 35574838
Alignment:
Q  102 ttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaa 197  Q
    ||||| |||||||||||||||||| |||||||| | || ||||||||| || ||| ||  ||||  |||||| ||||| ||||||||| |||||||    
T  35574743 ttgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacgaaagagattaaaatcatatgttcaatgaaagatatgaaaa 35574838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 12782535 - 12782463
Alignment:
Q  84 tgagaccaacattatctcttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaac 156  Q
    |||||||||||||| | ||  || |||||||| ||| |||||||||||||| ||||| |||||||| ||||||    
T  12782535 tgagaccaacattacccctcaatgaattgaggataaattacctctaatgacaagtagaattcgattctgaaac 12782463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 29969165 - 29969097
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    ||||||||||| || || ||||||||||| ||||||| | |  ||||||||||||||| |||||||||||    
T  29969165 atgttgaatgaaggggaagaagaagtttgatgttctt-gaaaaaaaatggtaactgattgtaagaaaaaa 29969097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 25062544 - 25062367
Alignment:
Q  19 agatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaatt-atattgatgagaccaacattatctcttgattaattgagggt 117  Q
    ||||||||||||||| | |||||   ||||||| ||||| |||| |||||||||||   | |||| |||  || |||||||  |||||| ||||||||||    
T  25062544 agatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggt 25062445  T
Q  118 aatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaa 195  Q
    |||||||| ||||| || ||||||||| |||| || ||||||| ||||| | |||| ||||| ||||||  |||||||    
T  25062444 aatttacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagatgaa 25062367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 15131586 - 15131698
Alignment:
Q  9 tgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttgatta 108  Q
    ||||||| |||||||||||| |||| |||||||   || ||||||||||||||| |||||||||||  |||| |||||| || ||||||  ||||||| |    
T  15131586 tgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaaaaaaccatatcgatgag-cctacattaattcttgatga 15131684  T
Q  109 attgagggtaattt 122  Q
    ||| ||||||||||    
T  15131685 attaagggtaattt 15131698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 11020075 - 11020141
Alignment:
Q  162 agatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatgacaact 229  Q
    ||||| |||||| ||||||||| || ||||| |||| | |||||||||||||||||||||||| ||||    
T  11020075 agatgcaaatcacatgttaaataaaggagat-aaaaggtttgatatttttaagatgaaaatgataact 11020141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 32047325 - 32047194
Alignment:
Q  92 acattatctcttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagaga 191  Q
    |||||||| |||||| |||||||| |||||||||||||||||  |||||||||| ||| || ||  ||||||| | | |||| ||||| |||||| ||||    
T  32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgaga 32047226  T
Q  192 tgaaaatgcttgatatttttaagatgaaaatg 223  Q
    |||| | | ||||| || || |||||||||||    
T  32047225 tgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32047246 - 32047190
Alignment:
Q  1 tcatatgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaa 57  Q
    |||||||||||||||  |||||||||||||||| |||||||   |||||||||||||    
T  32047246 tcatatgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatggtaa 32047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 44330531 - 44330392
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttg 104  Q
    |||| |||| ||||| |||||||||| || |||| ||  |||||||||||||| || | ||||||||||||||||||  |||| | || ||||||| |||    
T  44330531 atgtagaataatggaaatgaagaagtgtgatgtttttgatatgaaaatggtaaatggttgtaagaaaaaattatatttgtgaggcaaagattatcttttg 44330432  T
Q  105 attaattgagggtaatttacctctaatgactagtaggatt 144  Q
    || |||||  |||||||||  |||||| | ||||||||||    
T  44330431 atgaattggaggtaatttatttctaataattagtaggatt 44330392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 46081039 - 46080970
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    ||||||| ||| ||||||||||||||||  |||||||   ||||||||||||| |||| |||||||||||    
T  46081039 atgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaaa 46080970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 38839577 - 38839715
Alignment:
Q  84 tgagaccaacattatctcttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaat 183  Q
    ||||||| |||||| | |||||| || ||| ||||||| ||  |||||||  ||||||||||||||||| ||| ||||||||  | |||| ||||  |||    
T  38839577 tgagacctacattaccccttgatgaactgacggtaattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaat 38839676  T
Q  184 gaaagagatgaaaatgcttgatatttttaagatgaaaat 222  Q
    |||  ||||||| | | ||||| || || ||||||||||    
T  38839677 gaagaagatgaagaggtttgatgttcttgagatgaaaat 38839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 68165 - 68096
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    ||||| ||||| ||||||||||||||| | |||||||   || |||||||||||| || |||||||||||    
T  68165 atgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaaaaaa 68096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 10775231 - 10775162
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    |||||||| ||  |||||||||||||||| |||||||   ||||||||||||| ||||  ||||||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaa 10775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 49897998 - 49897922
Alignment:
Q  115 ggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagaga 191  Q
    |||||||||||||||||||| | || ||||||||| |  ||||||| ||||| | |||| ||||| |||||| ||||    
T  49897998 ggtaatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaatgaaggaga 49897922  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 31171386 - 31171487
Alignment:
Q  92 acattatctcttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagaga 191  Q
    |||||||| |||||| ||||| ||||||||||||| |||| || |||||||||||||| |||||| ||  ||||| |||||| || || ||||||| |||    
T  31171386 acattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggaaatcacattttgaatgaaacaga 31171485  T
Q  192 tg 193  Q
    ||    
T  31171486 tg 31171487  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 31152738 - 31152926
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttg 104  Q
    |||||||||||  || ||||||||| ||| |||| ||   ||||||||||||| || | ||| |||||||  | | ||||||   | |||||||| ||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaattggttgtatgaaaaaaccaaaatgatgaagtctacattatcacttg 31152837  T
Q  105 attaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatg 193  Q
    || ||||| ||||||||||||| |||| || |||||||||||||| |||||| ||  ||||| | |||| || || ||||||| |||||    
T  31152838 atgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatg 31152926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 42012855 - 42012687
Alignment:
Q  19 agatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttgattaattgagggta 118  Q
    ||||||| ||||||| |||||||   || ||| |||||||||||  ||||||||||  |||||||||| ||  ||||| |  |||||||||||| |||||    
T  42012855 agatgaaaaagtttgatgttcttgtgataaaagtggtaactgattctaagaaaaaaccatattgatga-acttacatttttccttgattaattg-gggta 42012758  T
Q  119 atttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaaga 189  Q
    ||||| | || |||||   || ||||||||| || ||| || ||||||||||||| || ||||||||||||    
T  42012757 atttatccctcatgacatatatgattcgattttggaacgaaaaagatgtaaatcacatcttaaatgaaaga 42012687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 8900670 - 8900810
Alignment:
Q  18 gagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttgattaattgagggt 117  Q
    ||||||||||||||||||||||||   || |||||||||| | || |||||||||||  | | || |||  || ||||||||  ||||| ||||| ||||    
T  8900670 gagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaacaaaaatgttgaagcctacattatccattgatgaattg-gggt 8900768  T
Q  118 aatttacctctaatgactagtaggattcgattgtgaaacaaa 159  Q
    |||||| | ||||| || ||||| |||||||| |||||||||    
T  8900769 aatttatccctaataacaagtagaattcgattatgaaacaaa 8900810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 23944183 - 23944088
Alignment:
Q  136 agtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatgacaactaa 231  Q
    |||| ||||||||| || || |||| ||||| |||||| ||||| ||||||||||| ||| | | ||||| || |||||||||||||| |||||||    
T  23944183 agtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaactaa 23944088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 23944144 - 23944034
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttg 104  Q
    |||||||||||  |||| ||||||||||| |||||||   |||||||||| |||| || ||||||||||| |  | || ||||||| |||||| | ||||    
T  23944144 atgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaactaattgtaagaaaaaacttaaatggtgagacctacattaccccttg 23944045  T
Q  105 attaattgagg 115  Q
    || ||||||||    
T  23944044 atgaattgagg 23944034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 31152721 - 31152786
Alignment:
Q  158 aagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatg 223  Q
    ||||||||| |||| | ||||| ||||||||| ||||| | | ||||| |||||||||||||||||    
T  31152721 aagaagatgaaaattagatgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatg 31152786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 32138893 - 32138962
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    |||||||| || |||||||||||| |||| |||||||   ||||||||||||| ||||  ||||||||||    
T  32138893 atgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaaa 32138962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 34891601 - 34891532
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaa 74  Q
    ||||||||||| |||||||||||| |||| |||||||   || |||||| ||||| || |||||||||||    
T  34891601 atgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaaaaaa 34891532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 39341267 - 39341148
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaattatattgatgagaccaacattatctcttg 104  Q
    ||||||||||| ||||||||| ||||||| | |||||   ||||||||||||||| || ||||||||||||||||| | |||| |  | ||| |  ||||    
T  39341267 atgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaactcatagtaagaaaaaattatatcggtgag-catatatttttccttg 39341169  T
Q  105 attaattgagggtaatttacc 125  Q
    ||||||||||| |||||||||    
T  39341168 attaattgaggataatttacc 39341148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 42091791 - 42091847
Alignment:
Q  168 aaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatga 224  Q
    |||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||||||    
T  42091791 aaatcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatga 42091847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 39341328 - 39341219
Alignment:
Q  114 gggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaa 213  Q
    ||||||||||||||||||||  | || ||||| ||| |  ||| ||| | ||| | |||  ||||| |||||| |||||||||| | |||||||| ||||    
T  39341328 gggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaaggagatgaaaaagtttgatattcttaa 39341229  T
Q  214 gatgaaaatg 223  Q
    ||||||||||    
T  39341228 gatgaaaatg 39341219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 54437873 - 54437804
Alignment:
Q  6 tgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaaaaaat 75  Q
    |||| ||||| | ||||||||||||||| |||| ||   || ||||||||||||||| ||||||||||||    
T  54437873 tgttaaatgaggaagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaaat 54437804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 2563115 - 2562965
Alignment:
Q  48 aaaatggtaactgatcgtaagaaaaaat-tatattgatgagaccaacattatctcttgattaattgagggtaatttacctctaatgactagtaggattcg 146  Q
    |||||| |||||| | |||||||||||| | |||  |||||||| |||||| | |||||| |||   |||||||||||| | |||||  |||| ||||||    
T  2563115 aaaatgataactgcttgtaagaaaaaatctctatcaatgagacctacattaccccttgatgaatat-gggtaatttacc-caaatgataagtatgattcg 2563018  T
Q  147 attgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatg 199  Q
    ||| |||||||||  | ||  | |||| ||||| |||||||||||||||||||    
T  2563017 attctgaaacaaatgatatagagatcacatgttgaatgaaagagatgaaaatg 2562965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 2243250 - 2243371
Alignment:
Q  101 cttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgc 200  Q
    |||||| ||||| ||||||||||||||||||||| ||||  |||||||| |  ||| ||||||||| | |||| ||||| |||||| || ||||| | |     
T  2243250 cttgatgaattg-gggtaatttacctctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatgaagaagt 2243348  T
Q  201 ttgatatttttaagatgaaaatg 223  Q
    ||||| || || |||||||||||    
T  2243349 ttgatgttcttgagatgaaaatg 2243371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 2243323 - 2243388
Alignment:
Q  5 atgttgaatgatggagatgaagaagtttgttgttcttcgtatgaaaatggtaactgatcgtaagaa 70  Q
    ||||||||||| ||| ||||||||||||| |||||||   ||||||||||||||| || |||||||    
T  2243323 atgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 14138646 - 14138565
Alignment:
Q  142 attcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatg 223  Q
    |||||||| | ||||||| |||||| | || | ||||| |||||||||||||| || | |||||||| ||||||||||||||    
T  14138646 attcgattttcaaacaaaaaagatgaagattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatg 14138565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 40483829 - 40483703
Alignment:
Q  95 ttatctcttgattaattgagggtaatttacctctaatgactagtaggattcgattgtgaaacaaagaagatgtaaatcaaatgttaaatgaaagagatga 194  Q
    |||||||||||| |||||||||||| ||||| | |||||  |||| ||||||||| || ||| ||  ||||| | |||| ||||| |||||  |||||||    
T  40483829 ttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgagatga 40483730  T
Q  195 aaatgcttgatatttttaagatgaaaat 222  Q
    | | | ||||| ||||| ||||||||||    
T  40483729 agaagtttgatgttttt-agatgaaaat 40483703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 39730313 - 39730361
Alignment:
Q  175 atgttaaatgaaagagatgaaaatgcttgatatttttaagatgaaaatg 223  Q
    ||||||||||||||||||||||| | ||||| || || |||||||||||    
T  39730313 atgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaatg 39730361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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