View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9335_low_8 (Length: 239)
Name: NF9335_low_8
Description: NF9335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9335_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9050781 - 9051003
Alignment:
| Q |
1 |
tattgcgtgtagtctttttggactacaatgnnnnnnnccatgtagtagaagccatacaattttcacctcatttcagaataaaatttgaaaccttactgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9050781 |
tattgcgtgtagtctttttggactacaatgtttttttccatgtagtagaagccatacaattttcacctcatttcagaataaaatttgaaaccttactgct |
9050880 |
T |
|
| Q |
101 |
tgcatgacaattgttagttatgaatttgaatatgatctcctatccggtcagtcctcatttagtccagtcaaaagtacaaggataacttcgttgtatatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9050881 |
tgcatgacaattgttagttatgaatttgaatatgatctcctatccggtcaatcctcatttagtccagtcaaaagtacaaggataacttcgtcgtatatga |
9050980 |
T |
|
| Q |
201 |
ctcaaaagattttgttcatatac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9050981 |
ctcaaaagattttgttcatatac |
9051003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University