View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9336_high_3 (Length: 354)

Name: NF9336_high_3
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9336_high_3
NF9336_high_3
[»] chr7 (4 HSPs)
chr7 (17-340)||(40109507-40109836)
chr7 (17-137)||(40147428-40147548)
chr7 (17-137)||(40154070-40154190)
chr7 (288-325)||(2811269-2811306)
[»] chr4 (1 HSPs)
chr4 (284-326)||(40583987-40584029)
[»] chr2 (1 HSPs)
chr2 (284-323)||(22877102-22877141)
[»] chr3 (1 HSPs)
chr3 (291-325)||(37817268-37817302)
[»] chr8 (2 HSPs)
chr8 (284-325)||(3943758-3943799)
chr8 (281-326)||(8217029-8217074)
[»] chr6 (1 HSPs)
chr6 (284-325)||(8013848-8013889)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 40109836 - 40109507
Alignment:
Q  17 agtctctatgtagatcactcaagagttcattctctgatgcaaatatgttgttgatcatacctcttattgcatattcaggtctacaagcagcatttgtatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40109836 agtctctatgtagatcactcaagagttcattctctgatgcaaatatgttgttgatcatacctcttattgcatattcaggtctacaagcagcatttgtatg 40109737  T
Q  117 gtaatttcttatgaaccataacatcatatgtcttcataatctactagtattaatagtactggttctgagttctaccggtgtcc--nnnnnnnnngtgtgt 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  40109736 gtaatttcttatgaaccataacatcatatgtcttcacaatctactagtattaatagtactggttctgagttctaccggtgtcctttttttttttgtgtgt 40109637  T
Q  215 a----gtttgtaccattcggccatttaccaccaacatttcatattcaatgtgtgtctagtgtcatataccacgcatgtggttacattcaattacttttat 310  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40109636 agtttgtttgtaccattcggccatttaccaccaacatttcatattcaatgtgtgtctagtgtcatataccacgcatgtggttacattcaattacttttat 40109537  T
Q  311 tttttaaaattattatttcgtctatgtgtc 340  Q
    ||||||||||||||||||||||||||||||    
T  40109536 tttttaaaattattatttcgtctatgtgtc 40109507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 40147548 - 40147428
Alignment:
Q  17 agtctctatgtagatcactcaagagttcattctctgatgcaaatatgttgttgatcatacctcttattgcatattcaggtctacaagcagcatttgtatg 116  Q
    |||||||||||| ||||||||  ||| || | |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  40147548 agtctctatgtaaatcactcacaagtgcactgtctgatgcgaagatgttgttgatcataccccttatggcatattcaggtctacaacaagcatttgtatg 40147449  T
Q  117 gtaatttcttatgaaccataa 137  Q
    |||||||| |||||| |||||    
T  40147448 gtaatttcatatgaatcataa 40147428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 40154190 - 40154070
Alignment:
Q  17 agtctctatgtagatcactcaagagttcattctctgatgcaaatatgttgttgatcatacctcttattgcatattcaggtctacaagcagcatttgtatg 116  Q
    ||||||||||||||||||||| | || || | |||||||  || ||||||||||||||||| ||||| ||||||||||||||||||   || ||||||||    
T  40154190 agtctctatgtagatcactcacgggtgcactgtctgatgtgaagatgttgttgatcataccccttatagcatattcaggtctacaacacgcttttgtatg 40154091  T
Q  117 gtaatttcttatgaaccataa 137  Q
    |||||||| |||||| |||||    
T  40154090 gtaatttcatatgaatcataa 40154070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 2811306 - 2811269
Alignment:
Q  288 tggttacattcaattacttttattttttaaaattatta 325  Q
    |||||||||||||||||||||||||| | |||||||||    
T  2811306 tggttacattcaattacttttattttcttaaattatta 2811269  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 40583987 - 40584029
Alignment:
Q  284 catgtggttacattcaattacttttattttttaaaattattat 326  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  40583987 catgtgtttacattcaatcacttttattttttaaaattattat 40584029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 22877141 - 22877102
Alignment:
Q  284 catgtggttacattcaattacttttattttttaaaattat 323  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  22877141 catgtggttacattcaattactttcatttttaaaaattat 22877102  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 37817302 - 37817268
Alignment:
Q  291 ttacattcaattacttttattttttaaaattatta 325  Q
    ||||||||||||||||| |||||||||||||||||    
T  37817302 ttacattcaattactttcattttttaaaattatta 37817268  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 3943799 - 3943758
Alignment:
Q  284 catgtggttacattcaattacttttattttttaaaattatta 325  Q
    |||||||||||||||||| ||||||||||| | |||||||||    
T  3943799 catgtggttacattcaatcacttttattttcttaaattatta 3943758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 8217029 - 8217074
Alignment:
Q  281 acgcatgtggttacattcaattacttttattttttaaaattattat 326  Q
    |||||||| ||||||||||||| ||| |||||| ||||||||||||    
T  8217029 acgcatgtagttacattcaattccttctattttctaaaattattat 8217074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 8013848 - 8013889
Alignment:
Q  284 catgtggttacattcaattacttttattttttaaaattatta 325  Q
    |||||||||||||||||| |||| |||||||| |||||||||    
T  8013848 catgtggttacattcaatcacttatattttttcaaattatta 8013889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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