View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9336_low_13 (Length: 295)

Name: NF9336_low_13
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9336_low_13
NF9336_low_13
[»] chr2 (10 HSPs)
chr2 (16-213)||(5433671-5433868)
chr2 (224-284)||(23719631-23719691)
chr2 (224-284)||(24107303-24107363)
chr2 (224-284)||(37311245-37311305)
chr2 (224-284)||(5421949-5422009)
chr2 (224-284)||(17537439-17537499)
chr2 (228-284)||(34520252-34520308)
chr2 (224-284)||(6978448-6978508)
chr2 (224-284)||(10359082-10359142)
chr2 (224-278)||(33405449-33405503)
[»] chr8 (5 HSPs)
chr8 (224-284)||(19241261-19241321)
chr8 (224-284)||(19314445-19314505)
chr8 (224-284)||(38032493-38032553)
chr8 (224-284)||(26488075-26488135)
chr8 (224-284)||(42167494-42167554)
[»] chr7 (7 HSPs)
chr7 (224-284)||(2205790-2205850)
chr7 (224-284)||(20876599-20876659)
chr7 (224-284)||(22292465-22292525)
chr7 (224-284)||(43349922-43349982)
chr7 (224-284)||(42736598-42736658)
chr7 (225-284)||(17184800-17184859)
chr7 (224-284)||(15899897-15899956)
[»] chr6 (2 HSPs)
chr6 (224-284)||(12398414-12398474)
chr6 (225-284)||(32133153-32133212)
[»] chr5 (9 HSPs)
chr5 (224-284)||(7484041-7484101)
chr5 (224-284)||(41088417-41088477)
chr5 (224-282)||(4722611-4722669)
chr5 (224-284)||(36348913-36348973)
chr5 (224-284)||(40937052-40937112)
chr5 (224-284)||(1696354-1696414)
chr5 (224-279)||(11356974-11357029)
chr5 (224-279)||(11357211-11357266)
chr5 (224-284)||(1972989-1973049)
[»] chr4 (11 HSPs)
chr4 (224-284)||(36774993-36775053)
chr4 (224-284)||(2567602-2567662)
chr4 (224-284)||(22438250-22438310)
chr4 (224-284)||(45941134-45941194)
chr4 (224-284)||(51026339-51026399)
chr4 (224-284)||(2774629-2774689)
chr4 (224-284)||(17045360-17045420)
chr4 (224-284)||(43887769-43887829)
chr4 (227-278)||(10315630-10315681)
chr4 (226-284)||(14968759-14968817)
chr4 (234-280)||(49816058-49816104)
[»] chr3 (13 HSPs)
chr3 (224-284)||(34470597-34470657)
chr3 (224-284)||(51016909-51016969)
chr3 (224-284)||(10051887-10051947)
chr3 (228-284)||(11377533-11377589)
chr3 (224-284)||(44929089-44929149)
chr3 (224-284)||(47759492-47759552)
chr3 (224-284)||(49275017-49275077)
chr3 (224-284)||(50457782-50457842)
chr3 (224-284)||(42322012-42322071)
chr3 (228-284)||(46412822-46412878)
chr3 (224-284)||(51011855-51011915)
chr3 (224-284)||(30194158-30194218)
chr3 (234-284)||(14633086-14633136)
[»] chr1 (12 HSPs)
chr1 (224-284)||(23344133-23344193)
chr1 (227-284)||(39855777-39855834)
chr1 (224-284)||(24268902-24268962)
chr1 (224-284)||(38043735-38043795)
chr1 (224-284)||(49260212-49260272)
chr1 (224-284)||(15355316-15355376)
chr1 (224-284)||(37779729-37779789)
chr1 (224-284)||(40531981-40532041)
chr1 (234-284)||(35585458-35585508)
chr1 (225-284)||(17684867-17684923)
chr1 (234-284)||(35186621-35186671)
chr1 (224-269)||(14440778-14440823)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 5433671 - 5433868
Alignment:
Q  16 acaatcaccttcgagaaaatgagaaaaccctaaccttatcagggtttcaatcgacttcgtcatctgggtttccatttcatgtcaagctcggtttcaatca 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5433671 acaataaccttcgagaaaatgagaaaaccctaaccttatcagggtttcaatcgacttcgtcatctgggtttccatttcatgtcaagctcggtttcaatca 5433770  T
Q  116 acttcgtcacctgtcatcgtctttgtcaagctcctatttcgttcagtgtgaaaccttattttgcttatttcgtttccatttccatactcctggtttgc 213  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5433771 actttgtcacctgtcatcgtctttgtcaagctcctatttcgttcagtgtgaaaccttattttgcttatttcgtttccatttccatactcctggtttgc 5433868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 23719631 - 23719691
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23719631 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 23719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 24107303 - 24107363
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  24107303 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 24107363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 37311245 - 37311305
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  37311245 attgattttatgatgttatgatagttaaggttgtttgaattgttaggtttaggttagaatt 37311305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 5422009 - 5421949
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  5422009 attgattttatgatgttatgatagtttatgttctttgaattgttaggtttaggttaaaatt 5421949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 17537439 - 17537499
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  17537439 attgattttatgatgttttgatagtttaggttgtttgaattgttaggtttaggttagaatt 17537499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 34520252 - 34520308
Alignment:
Q  228 attttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  34520252 attttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 34520308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 6978508 - 6978448
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  6978508 attgattttttgatgttatgaaagtttaggttgtttgaattgttaggtttaggttagaatt 6978448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 10359082 - 10359142
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||    
T  10359082 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttatgttataatt 10359142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 33405503 - 33405449
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggtt 278  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  33405503 attgattttatgatgttatgatagtttaggttgttagaattgttaggtttaggtt 33405449  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 19241261 - 19241321
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  19241261 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 19241321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 19314445 - 19314505
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  19314445 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 19314505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 38032493 - 38032553
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  38032493 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 38032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 26488135 - 26488075
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  26488135 attgattttatgatgttacgatagtttaggttgtttgaattgttaggtttaggttagaatt 26488075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 42167494 - 42167554
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  42167494 attgattttttgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 42167554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 2205790 - 2205850
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  2205790 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 2205850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 20876599 - 20876659
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  20876599 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 20876659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 22292525 - 22292465
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  22292525 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 22292465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 43349922 - 43349982
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  43349922 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 43349982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 42736658 - 42736598
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  42736658 attgattttatgatgttatgatagtttagattgtttgaattgttaggtttaggttagaatt 42736598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 17184859 - 17184800
Alignment:
Q  225 ttgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  17184859 ttgattttatgatgttatgatagtttagtttgtttgaattgttaggtttaggttagaatt 17184800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 15899897 - 15899956
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||||| || ||||| || ||||||||| |||||||||| ||||    
T  15899897 attgattttatgatgttatgataatttaggttgttagaattgtta-gtttaggttataatt 15899956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 12398474 - 12398414
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  12398474 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 12398414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 32133153 - 32133212
Alignment:
Q  225 ttgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  32133153 ttgattttatgatgttatgatagtttaggttgttagaattgttaggtttaggttagaatt 32133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 7484041 - 7484101
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  7484041 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 7484101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 41088417 - 41088477
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  41088417 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 41088477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 4722611 - 4722669
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaa 282  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4722611 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaa 4722669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 36348913 - 36348973
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  36348913 attgattttatgatgttatgatagtttagattgtttgaattgttaggtttaggttagaatt 36348973  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 40937112 - 40937052
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  40937112 attgattttatgatgttatgatagtttaggttgtttgaattgttatgtttaggttagaatt 40937052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 1696414 - 1696354
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||    
T  1696414 attgattttatgatgttatgatagtttatgttgtttgaattgttaggtttaggttaaaatt 1696354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 11357029 - 11356974
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggtta 279  Q
    ||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||    
T  11357029 attgattttatgatgttattatagtttatgttgtttgaattgttaggtttaggtta 11356974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 11357211 - 11357266
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggtta 279  Q
    ||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||    
T  11357211 attgattttatgatgttattatagtttatgttgtttgaattgttaggtttaggtta 11357266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 1973049 - 1972989
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||| |||||||||||  |||| |||||||||||||||||| |||| ||||    
T  1973049 attgattttatgatattatgatagtttgggttgtttgaattgttaggtttatgttaaaatt 1972989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 36774993 - 36775053
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  36774993 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 36775053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 2567602 - 2567662
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  2567602 attgattttgtgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 2567662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 22438310 - 22438250
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  22438310 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttatgttagaatt 22438250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 45941194 - 45941134
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  45941194 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttataatt 45941134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 51026339 - 51026399
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  51026339 attgattttatgatgttatgatagtttaggttgtttgaattgttagatttaggttagaatt 51026399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 2774689 - 2774629
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||    
T  2774689 attgattttatgatgttatgatagtttaagttgtttgaatggttaggtttaggttagaatt 2774629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 17045360 - 17045420
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||    
T  17045360 attgattttatgatgttatggtagtttaggttgttagaattgttaggtttaggttagaatt 17045420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 43887769 - 43887829
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||    
T  43887769 attgattttatgatgttatgagagtttaggttgtttgaattgttaggtttatattagaatt 43887829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 10315681 - 10315630
Alignment:
Q  227 gattttatgatgttatgatagttcaggttctttgaattgttaggtttaggtt 278  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  10315681 gattttatgatgttatgatagtttaggttgttagaattgttaggtttaggtt 10315630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 14968759 - 14968817
Alignment:
Q  226 tgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||| || ||||| || ||||||||| |||||| ||| ||||    
T  14968759 tgattttatgatgttatgataatttaggttgttagaattgttatgtttagtttataatt 14968817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 49816058 - 49816104
Alignment:
Q  234 tgatgttatgatagttcaggttctttgaattgttaggtttaggttag 280  Q
    |||| ||||||||||| ||||| || |||||||||||||||||||||    
T  49816058 tgattttatgatagtttaggttgttagaattgttaggtttaggttag 49816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 34470597 - 34470657
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  34470597 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 34470657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 51016969 - 51016909
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  51016969 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 51016909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 10051887 - 10051947
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  10051887 attgattttatgatgttctgatagtttaggttgtttgaattgttaggtttaggttagaatt 10051947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 11377533 - 11377589
Alignment:
Q  228 attttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  11377533 attttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 11377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 44929149 - 44929089
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  44929149 attggttttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 44929089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 47759492 - 47759552
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  47759492 attgattttatgatgttatgatagtttaggttgtttgaattgttaggattaggttagaatt 47759552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 49275077 - 49275017
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  49275077 attgattttatgatgttctgatagtttaggttgtttgaattgttaggtttaggttagaatt 49275017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 50457782 - 50457842
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  50457782 attgattttatgatgttatgatggtttaggttgtttgaattgttaggtttaggttagaatt 50457842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 42322012 - 42322071
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  42322012 attgattttatgatgttatgatagtt-aggttgtttgaattgttaggtttaggttaaaatt 42322071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 46412822 - 46412878
Alignment:
Q  228 attttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  46412822 attttatgatgttctgatagtttaggttgtttgaattgttaggtttaggttagaatt 46412878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 51011855 - 51011915
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  51011855 attgaatttatgatgttatgatagtttaggttgtttgaattgttaggtttaagttagaatt 51011915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 30194218 - 30194158
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||| ||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||    
T  30194218 attgagtttatgatgctatgataatttaggttgtttgaattgttaggtttaggttagaatt 30194158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 14633136 - 14633086
Alignment:
Q  234 tgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  14633136 tgattttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 14633086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 23344193 - 23344133
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23344193 attgattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 23344133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 39855777 - 39855834
Alignment:
Q  227 gattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  39855777 gattttatgatgttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 39855834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 24268902 - 24268962
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  24268902 attgattttatgatgttatgatagtttaggttgtttgaattgttagatttaggttagaatt 24268962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 38043735 - 38043795
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  38043735 attgattttatgatgttatgatagtttagattgtttgaattgttaggtttaggttagaatt 38043795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 49260212 - 49260272
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  49260212 attgattttatgatgttatgacagtttaggttgtttgaattgttaggtttaggttagaatt 49260272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 15355316 - 15355376
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||    
T  15355316 attgattttatgatgttttgatagtttaggttgtttgaattgttaggtttagattagaatt 15355376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 37779789 - 37779729
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  37779789 attgattttatgatattatgatagtttaggttgtttgaattgttaggtttagattagaatt 37779729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 40531981 - 40532041
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||    
T  40531981 attgattttatgatgttatgataatttagtttgtttgaattgttaggtttaggttagaatt 40532041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 35585458 - 35585508
Alignment:
Q  234 tgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35585458 tgattttatgatagtttaggttgtttgaattgttaggtttaggttagaatt 35585508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 17684867 - 17684923
Alignment:
Q  225 ttgattttatgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    ||||||||||||||||||   |||| ||||| ||||||||||||||||||||||||||||    
T  17684867 ttgattttatgatgttat---agtttaggttgtttgaattgttaggtttaggttagaatt 17684923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 35186671 - 35186621
Alignment:
Q  234 tgatgttatgatagttcaggttctttgaattgttaggtttaggttagaatt 284  Q
    |||| ||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  35186671 tgattttatgatagtttaggttgtttgaattgttaggtttagattagaatt 35186621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 14440823 - 14440778
Alignment:
Q  224 attgattttatgatgttatgatagttcaggttctttgaattgttag 269  Q
    ||||||||||||||||||| |||||| ||||| |||||||||||||    
T  14440823 attgattttatgatgttattatagtttaggttgtttgaattgttag 14440778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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