View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9336_low_16 (Length: 268)

Name: NF9336_low_16
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9336_low_16
NF9336_low_16
[»] chr8 (5 HSPs)
chr8 (71-260)||(30049692-30049882)
chr8 (73-260)||(30045289-30045477)
chr8 (77-260)||(7162644-7162828)
chr8 (74-112)||(44732162-44732200)
chr8 (74-112)||(44734475-44734513)
[»] chr3 (6 HSPs)
chr3 (74-260)||(22361183-22361369)
chr3 (76-260)||(22365570-22365754)
chr3 (71-179)||(36028804-36028912)
chr3 (196-248)||(23397192-23397244)
chr3 (73-112)||(28784833-28784872)
chr3 (74-112)||(5353344-5353382)
[»] chr4 (3 HSPs)
chr4 (73-260)||(3945946-3946129)
chr4 (74-260)||(3941547-3941729)
chr4 (72-112)||(22804930-22804970)
[»] scaffold1453 (1 HSPs)
scaffold1453 (74-253)||(1-180)
[»] chr5 (5 HSPs)
chr5 (74-260)||(196152-196338)
chr5 (74-260)||(200538-200717)
chr5 (71-112)||(32800637-32800678)
chr5 (17-51)||(17059023-17059057)
chr5 (75-112)||(32798325-32798362)
[»] chr7 (3 HSPs)
chr7 (74-258)||(39949304-39949488)
chr7 (74-258)||(39953696-39953880)
chr7 (17-63)||(19806812-19806858)
[»] chr2 (13 HSPs)
chr2 (72-257)||(1330736-1330921)
chr2 (17-73)||(39495399-39495455)
chr2 (17-73)||(39427547-39427603)
chr2 (17-73)||(39458369-39458425)
chr2 (15-73)||(39123682-39123740)
chr2 (17-63)||(39152068-39152114)
chr2 (17-65)||(39422345-39422393)
chr2 (20-62)||(39215096-39215138)
chr2 (17-63)||(39136451-39136497)
chr2 (74-112)||(45336578-45336616)
chr2 (74-112)||(45338890-45338928)
chr2 (17-62)||(38792273-38792318)
chr2 (24-60)||(39602164-39602200)
[»] chr1 (1 HSPs)
chr1 (74-112)||(1550476-1550514)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 71 - 260
Target Start/End: Complemental strand, 30049882 - 30049692
Alignment:
Q  71 ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnn-tggaagagaaagggacaataacaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  30049882 ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaaaaaaatggaagagaaagggacaataacaa 30049783  T
Q  170 tgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049782 tgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 30049692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 73 - 260
Target Start/End: Complemental strand, 30045477 - 30045289
Alignment:
Q  73 ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnn-tggaagagaaagggacaataacaatg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  30045477 ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaaaaaaatggaagagaaagggacaataacaatg 30045378  T
Q  172 tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045377 tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 30045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 77 - 260
Target Start/End: Complemental strand, 7162828 - 7162644
Alignment:
Q  77 tagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaa-ttagagaagnnnnnnnntggaagagaaagggacaataacaatgttta 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||    
T  7162828 tagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaaattagagaagaaaagaaatggaagagaaagggacaataacaatgttta 7162729  T
Q  176 ctatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7162728 ctatgctgcaaatttaatacaaaccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgct 7162644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 44732200 - 44732162
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||| || |||||||||||||||||||||||    
T  44732200 tgttagcttttgcaaaggcagcagaagcaataagctcaa 44732162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 44734513 - 44734475
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||| || |||||||||||||||||||||||    
T  44734513 tgttagcttttgcaaaggcagcagaagcaataagctcaa 44734475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 22361369 - 22361183
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  22361369 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt 22361270  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22361269 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgct 22361183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 22365754 - 22365570
Alignment:
Q  76 ttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgttta 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  22365754 ttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgttta 22365655  T
Q  176 ctatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22365654 ctatactgcaaatttgatacatatcatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgct 22365570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 36028804 - 36028912
Alignment:
Q  71 ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||    
T  36028804 ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaatagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaat 36028903  T
Q  171 gtttactat 179  Q
    |||||||||    
T  36028904 gtttactat 36028912  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 23397192 - 23397244
Alignment:
Q  196 ataccatccatacatccttcttacatacttatagccaaatactaagtaatgac 248  Q
    |||||||||||||||| |||||||||| ||| || |||||||| |||||||||    
T  23397192 ataccatccatacatctttcttacatatttagagtcaaatacttagtaatgac 23397244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 28784872 - 28784833
Alignment:
Q  73 ttgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  28784872 ttgttagcttttgcaaaggcagcagaagcaataagctcaa 28784833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 5353344 - 5353382
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||| || |||||||||||||||||||||||    
T  5353344 tgttagcttttgcaaaggcagcagaagcaataagctcaa 5353382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 73 - 260
Target Start/End: Complemental strand, 3946129 - 3945946
Alignment:
Q  73 ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  3946129 ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaa----aaaaatggaagagaaagggacaataacaatgt 3946034  T
Q  173 ttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3946033 ttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 3945946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 3941729 - 3941547
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  3941729 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaa----aaaaatggaagagaaagggacaataacaatgtt 3941634  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941633 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 3941547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 22804970 - 22804930
Alignment:
Q  72 tttgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  22804970 tttgttagcttttgcaaaggcagcagaagcaataagctcaa 22804930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1453 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 74 - 253
Target Start/End: Complemental strand, 180 - 1
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  180 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt 81  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  80 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 196152 - 196338
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||| |||||||||||||||    
T  196152 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacataaattagagaagaaaagaaatggaagagaaagagacaataacaatgtt 196251  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  196252 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgct 196338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 200538 - 200717
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||        ||||||||||||||||||||||||||||    
T  200538 tgttagcttttgtaatggtagcagaagcaataagctcaaaaacagaaa-------ttagagaagaaaagaaatggaagagaaagggacaataacaatgtt 200630  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  200631 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgct 200717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 32800678 - 32800637
Alignment:
Q  71 ttttgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  32800678 ttttgttagcttttgcaaaggcagcagaagcaataagctcaa 32800637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 17059057 - 17059023
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccat 51  Q
    ||||||||||||||||||||||||||||| |||||    
T  17059057 agttcttgcttgcgctctccaatcaagtcctccat 17059023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 32798362 - 32798325
Alignment:
Q  75 gttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    ||||||||||| || |||||||||||||||||||||||    
T  32798362 gttagcttttgcaaaggcagcagaagcaataagctcaa 32798325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 39949304 - 39949488
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  39949304 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt 39949403  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatg 258  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  39949404 tactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagcctatg 39949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 39953696 - 39953880
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  39953696 tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt 39953795  T
Q  174 tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatg 258  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  39953796 tactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagtctatg 39953880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 19806858 - 19806812
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctg 63  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  19806858 agttctttcttgcgctctccaatcaagtcctccatcaaacggagctg 19806812  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 1330921 - 1330736
Alignment:
Q  72 tttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatg 171  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||        ||||||||||||||||||||||||||    
T  1330921 tttgttagcttttgtaatggcagcagaaacaataagctcaaaaacagaaaacagaaatcaaagaagaaaagaaatggaagagaaagggacaataacaatg 1330822  T
Q  172 tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat 257  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||| |||||    
T  1330821 tttactatgctgcaaatttgatacataccatccttacatccttcttacatacttatagtcaaatacttactaatgactcaacctat 1330736  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 39495399 - 39495455
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgcttt 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39495399 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgcttt 39495455  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 39427547 - 39427603
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgcttt 73  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  39427547 agttcctgcttgcgctctccaatcaagtcattcatcaaacagagctgtgctttcttt 39427603  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 39458425 - 39458369
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgcttt 73  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||    
T  39458425 agttcttgcttgcgctctccaatcaagtcttccatcaaatagagttgtgcttccttt 39458369  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 39123740 - 39123682
Alignment:
Q  15 tcagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgcttt 73  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  39123740 tcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgcttt 39123682  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 39152114 - 39152068
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctg 63  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  39152114 agttcttgcttgcgctctccaatcaagtcctccatcaaatagagctg 39152068  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 39422345 - 39422393
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtg 65  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  39422345 agttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtg 39422393  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 39215138 - 39215096
Alignment:
Q  20 tcttgcttgcgctctccaatcaagtcatccatcaaacagagct 62  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  39215138 tcttgcttgcgctctccaatcaagtcgtccatcaaatagagct 39215096  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 39136497 - 39136451
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagctg 63  Q
    ||||||| |||| |||||||||||||||| |||||||||| ||||||    
T  39136497 agttctttcttgtgctctccaatcaagtcctccatcaaaccgagctg 39136451  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 45336616 - 45336578
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||| || |||||||||||||||||||||||    
T  45336616 tgttagcttttgcaaaggcagcagaagcaataagctcaa 45336578  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 45338928 - 45338890
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||| || |||||||||||||||||||||||    
T  45338928 tgttagcttttgcaaaggcagcagaagcaataagctcaa 45338890  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38792318 - 38792273
Alignment:
Q  17 agttcttgcttgcgctctccaatcaagtcatccatcaaacagagct 62  Q
    ||||||||| | ||||||||||||||||| ||||||||||| ||||    
T  38792318 agttcttgcctacgctctccaatcaagtcctccatcaaacatagct 38792273  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 39602200 - 39602164
Alignment:
Q  24 gcttgcgctctccaatcaagtcatccatcaaacagag 60  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  39602200 gcttgcgctctccaatcaagtcatccatgaaatagag 39602164  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 1550514 - 1550476
Alignment:
Q  74 tgttagcttttgtaatggcagcagaagcaataagctcaa 112  Q
    |||||||||||| || |||||||||||||||||||||||    
T  1550514 tgttagcttttgcaaaggcagcagaagcaataagctcaa 1550476  T

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