View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9336_low_18 (Length: 250)
Name: NF9336_low_18
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9336_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5791952 - 5791707
Alignment:
| Q |
1 |
cgagaataatctgatttgcccaacaaaaattgatcct---tctcgaaaacacatatcgtaccccatgatagaattactgttgaaagaaatggcatcaata |
97 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5791952 |
cgagaataatctgatttgcccaacaaaaattgatccagagtctcgaaaacacatatcgtaccccatgataaaattactgttgaaagaaatggcatcaata |
5791853 |
T |
|
| Q |
98 |
ttacacttgatcatgcatagtggtggcttagtccaaggtgctcgaaatcttcgtttcctact-gtgctaatgttctttgcatacaactcattttatt--g |
194 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
5791852 |
ttacacttgatcatgcatagtggtgacttagtccaaggtgctcgaaatcttcgtttcctactggtgctaatgttctttgcatacaactcattttattgag |
5791753 |
T |
|
| Q |
195 |
agtatcctttgcacgagtgactatggtggcgggagtggtgtctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5791752 |
agtatcctttgcacgagtgactatggtggcgggagtggtgtctgtg |
5791707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 899017 - 899133
Alignment:
| Q |
2 |
gagaataatctgatttgcccaacaaaaattgatcct------tctcgaaaacacatatcgtaccccatgatagaattactgttgaaagaaatggcatcaa |
95 |
Q |
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|||||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||| || |||| |||| |||||||| || ||||||||| |
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| T |
899017 |
gagaataatctgatttttccaacaaaaattga-cctgtagagtctcgaaaacacatttcgtaccctataatagtattattgttgaaaaaagtggcatcaa |
899115 |
T |
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| Q |
96 |
tattacacttgatcatgc |
113 |
Q |
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| T |
899116 |
cgttacacttgatcatgc |
899133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 21430944 - 21431191
Alignment:
| Q |
2 |
gagaataatctgatttgcccaacaaaaattgatcctt-----ctcgaaaacacatatcgtaccccatgatagaattactgttgaaagaaatggcatcaat |
96 |
Q |
| |
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||||||||||| |||||||||||||||||||| || | ||||||||||||| ||| ||||| |||| |||||||||||||||| | | |||| |
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| T |
21430944 |
gagaataatcttatttgcccaacaaaaattgacccatagagtctcgaaaacacatcatgtatcccataatagtattactgttgaaagaagtagtgtcaac |
21431043 |
T |
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| Q |
97 |
attacacttgatcatgcatagtggtggcttagtccaag-gtgctcgaaatcttcgtttccta-ctgtgctaatgttctttgcatacaactcattttattg |
194 |
Q |
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||||||||||||||||| ||||||||||| ||||| || ||||||| ||||||| |||| || | ||| | | ||||||| |||||| || ||| ||| |
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| T |
21431044 |
attacacttgatcatgcttagtggtggctgagtccgagtgtgctcggaatcttcatttcatatcggtgttttttctctttgcgtacaacacaatttgttg |
21431143 |
T |
|
| Q |
195 |
a--gtatcctttgcacgagtgactatggtggcgggagtggtgtctgtg |
240 |
Q |
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| T |
21431144 |
agggtatcctttgcgagagtgactgtggtggcgggagaggtgtctgtg |
21431191 |
T |
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