View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9336_low_3 (Length: 509)
Name: NF9336_low_3
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9336_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 478
Target Start/End: Original strand, 7108253 - 7108738
Alignment:
| Q |
9 |
agataatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcgttttttaaaactctagaccttaacatctttgccc |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7108253 |
agattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcattttttaaaactctagaccttaacatctttgccc |
7108352 |
T |
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| Q |
109 |
gatccgtatcagaagacgccattctctcaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccctccctcctctaatg |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7108353 |
aatccgtatcagaagacgccattctcccaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccctccttcctctaatg |
7108452 |
T |
|
| Q |
209 |
gcttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaat |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108453 |
gcttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaat |
7108552 |
T |
|
| Q |
309 |
gaaaatggcaaaccatataagaacaaattgtgtatcagtattccttgaatcaatgagattac----------------tatggttttctggaccccttga |
392 |
Q |
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|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7108553 |
gaaaatagcaaagcatataaggacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctggacatatggttttctggaccccttga |
7108652 |
T |
|
| Q |
393 |
taaggtctagcttaccttcatccaccaatctagaaatacttctgctcatcacctctttggcaaaacataaaaggagaggagagata |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108653 |
taaggtctagcttaccttcatccaccaatctagaaatacctctgctcatcacctctttggcaaaacataaaaggagaggagagata |
7108738 |
T |
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