View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9336_low_4 (Length: 470)
Name: NF9336_low_4
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9336_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 40471579 - 40471125
Alignment:
| Q |
16 |
cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471579 |
cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca |
40471480 |
T |
|
| Q |
116 |
agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471479 |
agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
40471380 |
T |
|
| Q |
216 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471379 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag |
40471280 |
T |
|
| Q |
316 |
ataaagtatggagtaataatagtaatcagaatgaaaggaatgaaggaagaatagagaatcaagtcaaagcttcacagcctaatgattctgctctagaaac |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
40471279 |
ataaagtatggagtaataatagtaatcagaatgaaaggaatgaaggaagaatagagaatcaagtcaaagcttcactgcctgatgattctgctctagaaac |
40471180 |
T |
|
| Q |
416 |
ttcttgtggtctaagcggggaatgtgaggaaggaagcaaaggatttgaggcagag |
470 |
Q |
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| T |
40471179 |
ttcttgtggtctaagtggggaatgtgaggaaggaagcaaaggatttgaggcagag |
40471125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 26332607 - 26332543
Alignment:
| Q |
93 |
tggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
157 |
Q |
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| T |
26332607 |
tggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcac |
26332543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 16863593 - 16863893
Alignment:
| Q |
16 |
cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
16863593 |
cacagagcattgaggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaagaag-- |
16863690 |
T |
|
| Q |
116 |
agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16863691 |
------------cgagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
16863778 |
T |
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| Q |
216 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16863779 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgacttctgatggaatggttcaag |
16863878 |
T |
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| Q |
316 |
ataaagtatggagta |
330 |
Q |
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||||||||||||||| |
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| T |
16863879 |
ataaagtatggagta |
16863893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 2056300 - 2056406
Alignment:
| Q |
81 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaa |
180 |
Q |
| |
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||||||||||| |||||||||||||| || |||||||| || || |||||||| ||||||||||| |||||||| || || | |||||||||||||||| |
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| T |
2056300 |
gatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaa |
2056399 |
T |
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| Q |
181 |
agaaagt |
187 |
Q |
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||||||| |
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| T |
2056400 |
agaaagt |
2056406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26967130 - 26967036
Alignment:
| Q |
79 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca |
173 |
Q |
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|||||||||| || ||||||||||||||||| || ||||| |||||||| || |||| |||||||||| || ||||| || |||||||||||| |
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| T |
26967130 |
atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca |
26967036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 18876394 - 18876301
Alignment:
| Q |
79 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc |
172 |
Q |
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||||||| || |||||||| ||||| |||||||| || || ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
18876394 |
atgatggctacaactggaggaaatacggacagaaacaggtgaaaggtagcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc |
18876301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 31615430 - 31615312
Alignment:
| Q |
79 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaa |
178 |
Q |
| |
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|||||||||| || ||| ||||||||||||| |||||||| || ||||| || |||| ||||||| ||||| |||||||| ||||| ||||| || |
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| T |
31615430 |
atgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactgtcctacaaa |
31615331 |
T |
|
| Q |
179 |
aaagaaagttgaaagatca |
197 |
Q |
| |
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||||||||||| |||||| |
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| T |
31615330 |
gaagaaagttgagagatca |
31615312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 3669194 - 3669270
Alignment:
| Q |
81 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
157 |
Q |
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|||||||| || ||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||||||||| |
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| T |
3669194 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
3669270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 32110321 - 32110260
Alignment:
| Q |
90 |
aactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaa |
151 |
Q |
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|||||||| || |||||||| || ||||| ||||| |||||| |||||||||||||||||| |
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|
| T |
32110321 |
aactggaggaagtatggacaaaaacaagtgaaaggttgcgagtttcctcgaagttattacaa |
32110260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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