View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9336_low_6 (Length: 419)
Name: NF9336_low_6
Description: NF9336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9336_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 126 - 405
Target Start/End: Original strand, 2742330 - 2742609
Alignment:
| Q |
126 |
ctgtgtgatatatctaatttgccgtatgtgacactaacatgagttatggaataattaattcaattccctaagaattgcactgaattacaagagtgaggag |
225 |
Q |
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| T |
2742330 |
ctgtgtgatatatctaatttgccgtatgtgacattaacatgagttatggaataattaattcaattccctaagaattgcactacattacaagagtgaggag |
2742429 |
T |
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| Q |
226 |
aataatttttcatgatataagaccttacatgacaacagctgctagtattggtctcaagttactcctacaagtctaggatactggtaatattaatatgcac |
325 |
Q |
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| T |
2742430 |
aataatttttcatgatataagaccttacatgacaacaggtgctagtattggtctcaagttactcctacaagtctaggatactggtaatattaatatgcac |
2742529 |
T |
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| Q |
326 |
tacattatatacatatatgcaaaatgtcatgaaaatgctaagcaatgttccaagcttgcataataaaccaataaaaaatt |
405 |
Q |
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| T |
2742530 |
tacattatatacatatatgcaaaatgtcatgaaaatgctaagcaatgttccaagcttgcataataaaccaataaaaaatt |
2742609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 2742214 - 2742265
Alignment:
| Q |
9 |
aatatgtcgtcacgtcaatttcatattcatcattcacatggcaacacatcat |
60 |
Q |
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| T |
2742214 |
aatatgttgtcacgtcaatttcattttcatcattcacatggcaacacatcat |
2742265 |
T |
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