View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9337_high_13 (Length: 280)
Name: NF9337_high_13
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 27858302 - 27858481
Alignment:
| Q |
7 |
aggacttcgtggtgtaccaggtgaaggagatttcggtgatgaaaaagtacttggaggactgcctagtgaatatcctggtggtctgaattccggtggagac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
27858302 |
aggacttcgtggtgtaccaggtgaaggagatttgggtgatgaaaaagtacttggaggactgcct------------ggtggtgtgaattctggtggagac |
27858389 |
T |
|
| Q |
107 |
ggctatcaacccgttagtgcagaagttcctggtggaggaggagatggaggactgtctgcaggtactgaagatgagttcctgcctgatgaaagagg |
201 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
27858390 |
ggctatcaacccggtggtgcagaagttcctggtggaggaggagatggaggactgtct---ggtactgaagatggagtcctgcctgatgaaagagg |
27858481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 27858479 - 27858519
Alignment:
| Q |
220 |
aggctatgtataatataattatggtcatcactaaatctata |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27858479 |
aggctatgtataatataattatggtcatcactaaatctata |
27858519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University