View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_high_4 (Length: 569)
Name: NF9337_high_4
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 38180325 - 38180861
Alignment:
| Q |
20 |
gcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180325 |
gcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggac |
38180424 |
T |
|
| Q |
120 |
gaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180425 |
gaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaa |
38180524 |
T |
|
| Q |
220 |
ttttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagca |
319 |
Q |
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| T |
38180525 |
ttttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagca |
38180624 |
T |
|
| Q |
320 |
aaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggt |
419 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180625 |
aaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggt |
38180724 |
T |
|
| Q |
420 |
tttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagtgtgatatgcaacggttatgcatgtatatggatggat |
519 |
Q |
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| T |
38180725 |
tttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagtgtgatatgcaacggttatgaatgtatatggatggat |
38180824 |
T |
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| Q |
520 |
agcataagccaagtgtttttatacaagtgatgtccat |
556 |
Q |
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||||||||| ||||||||||||||||||| ||||||| |
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| T |
38180825 |
agcataagctaagtgtttttatacaagtggtgtccat |
38180861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 38184994 - 38185435
Alignment:
| Q |
20 |
gcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184994 |
gcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggac |
38185093 |
T |
|
| Q |
120 |
gaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaa |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| || |||||||||||||||||||| |
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| T |
38185094 |
gaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaa |
38185193 |
T |
|
| Q |
220 |
ttttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagca |
319 |
Q |
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||| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||| |||||| |
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| T |
38185194 |
atttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagca |
38185293 |
T |
|
| Q |
320 |
aaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggt |
419 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38185294 |
aaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggt |
38185393 |
T |
|
| Q |
420 |
tttgcgccatggtagtggtggcttgtgaaaatgcaatagcac |
461 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38185394 |
tttgcgccatggtaatggtggcttgtgaaaatgcaatagcac |
38185435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 23 - 456
Target Start/End: Original strand, 38170514 - 38170947
Alignment:
| Q |
23 |
gcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgac |
122 |
Q |
| |
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||||||||||| || || | ||||||||||||||||||| |||||||||| | |||| | || |||| | |||| |||||||||||||||| || |
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| T |
38170514 |
gcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgat |
38170613 |
T |
|
| Q |
123 |
cttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattt |
222 |
Q |
| |
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||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | |||||||| || | |||| |
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| T |
38170614 |
tttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggattt |
38170713 |
T |
|
| Q |
223 |
tgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaa |
322 |
Q |
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| | || ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| |||||||||||||||| |
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| T |
38170714 |
ttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaa |
38170813 |
T |
|
| Q |
323 |
gtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggtttt |
422 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
38170814 |
gtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggtttt |
38170913 |
T |
|
| Q |
423 |
gcgccatggtagtggtggcttgtgaaaatgcaat |
456 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
38170914 |
gcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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