View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9337_low_10 (Length: 521)
Name: NF9337_low_10
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 152 - 354
Target Start/End: Complemental strand, 14831520 - 14831318
Alignment:
| Q |
152 |
atctagacatgttgtgttttatgaaaacatggttccgtttcataacaaagatacttctatgttacaaaatagtaattctcaaattcacttgcctaccgct |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14831520 |
atctagacatgttgtgttttatgaaaacatgtttccgtttcataacaaagaaacttctatgttacaaaatagtaattctcaaattcacttgcctaccgct |
14831421 |
T |
|
| Q |
252 |
tgtccgtttctaattcttttttatttatcttgtgacaatgatgaccatgacattgatagtaatgtagctataattcattttgctaagcataataatattc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14831420 |
tgtccgtttctaattcttttttatttatcttgtcacaatgatgaccatgacattgatagtaatgtagctataattcattttgctaagcataataatatcc |
14831321 |
T |
|
| Q |
352 |
att |
354 |
Q |
| |
|
||| |
|
|
| T |
14831320 |
att |
14831318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 360 - 504
Target Start/End: Complemental strand, 14831222 - 14831078
Alignment:
| Q |
360 |
tttgattgtcatcatgtttgtgagaaaatccaatatgataatattcatttactttccatctcttattctcaaatgaatgacattcacacaaaatacttgc |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14831222 |
tttgattgtcatcatgtttgtgagaaaatccaatatgataatattcatttactttctatctcttattctcaaatgaatgacattcacacaaaatactttc |
14831123 |
T |
|
| Q |
460 |
atctagttgtctttcaatcatttgtttccaagttaacctcattga |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14831122 |
atctagttgtctttcaatcatttgtttccaagttaacctcattga |
14831078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 14831744 - 14831813
Alignment:
| Q |
152 |
atctagacatgttgtgttttatgaaaacatggttccgtttcataacaaagatacttctatgttacaaaat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14831744 |
atctagacatgttgtgttttatgaaaacatgtttccgtttcataacaaagaaacttctatgttacaaaat |
14831813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University