View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_11 (Length: 459)
Name: NF9337_low_11
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 51846182 - 51845734
Alignment:
| Q |
1 |
cacttaagagtggctcataattatcggctagaagtatattgcttgatttgaggtttccatgtggcaggtcttcggattcaaattcagtataaagaaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846182 |
cacttaagagtggctcataattatcggctagaagtatattgcttgatttgaggtttccatgtggcaggtcttcggattcaaattcagtataaagaaatgt |
51846083 |
T |
|
| Q |
101 |
caatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacattacacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846082 |
caatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacattacacatg |
51845983 |
T |
|
| Q |
201 |
aatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845982 |
aatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccat |
51845883 |
T |
|
| Q |
301 |
gcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845882 |
gcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtt |
51845783 |
T |
|
| Q |
401 |
tctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgctt |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845782 |
tctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgctt |
51845734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 436
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
295 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
394 |
Q |
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|||| |||||||||||||||||||||||||||||| | || ||||||||||| | ||| ||||| | || ||||| ||||||||||||| ||||||||| |
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| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
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| Q |
395 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
436 |
Q |
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| | ||||| |||||||||| |||||||||| |||||||| |
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| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18627503 - 18627563
Alignment:
| Q |
1 |
cacttaagagtggctcataattatcggctagaagtatattgcttgatttgaggtttccatg |
61 |
Q |
| |
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||||||| || |||||||||| ||| | ||| || | |||||||||||||||||||||||| |
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| T |
18627503 |
cacttaaaagaggctcataatcatcagttagtagaacattgcttgatttgaggtttccatg |
18627563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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