View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9337_low_13 (Length: 458)

Name: NF9337_low_13
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9337_low_13
NF9337_low_13
[»] chr7 (7 HSPs)
chr7 (185-458)||(4856572-4856828)
chr7 (272-428)||(25432042-25432203)
chr7 (19-79)||(4856405-4856465)
chr7 (232-308)||(36647449-36647525)
chr7 (332-438)||(41830167-41830271)
chr7 (234-270)||(34510834-34510870)
chr7 (232-308)||(41830300-41830376)
[»] chr1 (5 HSPs)
chr1 (344-437)||(50038529-50038622)
chr1 (233-308)||(18705671-18705746)
chr1 (360-421)||(12436201-12436262)
chr1 (234-290)||(29849953-29850007)
chr1 (236-308)||(9908147-9908218)
[»] chr5 (4 HSPs)
chr5 (339-417)||(15531461-15531539)
chr5 (355-417)||(15531586-15531648)
chr5 (232-307)||(41951693-41951768)
chr5 (232-309)||(35309109-35309186)
[»] chr3 (2 HSPs)
chr3 (285-440)||(10744725-10744885)
chr3 (232-270)||(52737791-52737829)
[»] chr6 (3 HSPs)
chr6 (272-389)||(1136230-1136352)
chr6 (233-308)||(8655790-8655865)
chr6 (232-270)||(787437-787475)
[»] chr8 (1 HSPs)
chr8 (232-308)||(4676261-4676336)
[»] chr2 (1 HSPs)
chr2 (232-308)||(24038363-24038439)
[»] scaffold0023 (1 HSPs)
scaffold0023 (334-438)||(111613-111715)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 4856572 - 4856828
Alignment:
Q  185 tcataacagaaaattagaataaggaagaaagggaaagtgagaaaatgtatccttcaaggtgaataccagatttgctctgataccatattataaaacttgg 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4856572 tcataacagaaaattagaataaggaagaaagggaaagtgagaaaatgtatccttcaagatgaataccagaattgctctgataccatattataaaacttgg 4856671  T
Q  285 catccagagaaggaatgagagaaatattgcaaagctctttgtagaatttgaatattacaaaatgagtgaaagtttccactaatagagtggttacaagcta 384  Q
    |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||    
T  4856672 cat----agaaggaatgagagaaatattgcaaagctctttgtagaatttgaatattacaaaatgag-------------taatagagtggttacaagcta 4856754  T
Q  385 tttatggtactatttattagaactaatataccactaaacctatatctctaatactacctccgtccctaattata 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4856755 tttatggtactatttattagaactaatataccactaaacctatatctctaatactatctccgtccctaattata 4856828  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 428
Target Start/End: Complemental strand, 25432203 - 25432042
Alignment:
Q  272 ttataaaacttggcatccagagaaggaatgagagaaatattgcaaagctctttgta------gaatttgaatattacaaaatgagtgaaagtttccacta 365  Q
    |||| |||| |||||||||  ||||||||||||||||| | |||||| ||||| ||      ||| ||||||||||| || |||||||||||  ||||||    
T  25432203 ttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaa-tgagtgaaagtgcccacta 25432105  T
Q  366 atagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctata 428  Q
    || | ||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||    
T  25432104 atggggtggttacaagctatttatagtactatctattaggactaatataccactaatcctata 25432042  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 4856405 - 4856465
Alignment:
Q  19 aaatcgaaacacaaaagatgaattgcaataaggaaccctaagatttgggaaaaaggtgaag 79  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4856405 aaatcgaaacacaaaagatgaattgctataaggaaccctaagatttgggaaaaaggtgaag 4856465  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 36647449 - 36647525
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||  |||||  ||| ||||||||||||    
T  36647449 tatccttcaagatgaataccagattagctctgataccatattagaaaacatgatatccaatgaaagaatgagagaaa 36647525  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 438
Target Start/End: Complemental strand, 41830271 - 41830167
Alignment:
Q  332 ttgaatattacaaaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatct 431  Q
    |||||||||||||||||||  |||||| || ||||| | ||||||||||| |||||||  |||| | || ||| |||||||| | ||| || ||||||||    
T  41830271 ttgaatattacaaaatgag-aaaagttccctctaatggggtggttacaagttatttatactactctctactaggactaatatgctact-aatctatatct 41830174  T
Q  432 ctaatac 438  Q
    |||||||    
T  41830173 ctaatac 41830167  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 34510870 - 34510834
Alignment:
Q  234 tccttcaaggtgaataccagatttgctctgataccat 270  Q
    |||||||||||| |||||||||| |||||||||||||    
T  34510870 tccttcaaggtggataccagattagctctgataccat 34510834  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 41830376 - 41830300
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    |||||||||||||| ||||||  || ||||| ||||||| |||  |||| || ||||||  ||||||||||||||||    
T  41830376 tatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccatggaaggaatgagagaaa 41830300  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 437
Target Start/End: Complemental strand, 50038622 - 50038529
Alignment:
Q  344 aaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatctctaata 437  Q
    ||||||||||||||| |||||||| | || |||||||||||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||    
T  50038622 aaatgagtgaaagttcccactaatggggtagttacaagctatttttggtactatctattaggactaatataccactaatcttatatctctaata 50038529  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 18705671 - 18705746
Alignment:
Q  233 atccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||   |||||| ||||||||    
T  18705671 atccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccatgaaaggaaggagagaaa 18705746  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 12436262 - 12436201
Alignment:
Q  360 ccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaa 421  Q
    |||||||| | |||||||| ||||||||||  ||||||||| |||||||||||| |||||||    
T  12436262 ccactaatggggtggttactagctatttatactactatttactagaactaatatgccactaa 12436201  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 29849953 - 29850007
Alignment:
Q  234 tccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatcca 290  Q
    |||||||||||| ||||||  |||||||||||||||| |||| |||| |||||||||    
T  29849953 tccttcaaggtggatacca--tttgctctgataccatgttatgaaacatggcatcca 29850007  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 9908147 - 9908218
Alignment:
Q  236 cttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    |||||||||| |||||||||| ||||||||||||| |||  |||| ||  ||||| | |||||||||||||||    
T  9908147 cttcaaggtggataccagattagctctgataccatgttaggaaacatgatatcca-acaaggaatgagagaaa 9908218  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 15531461 - 15531539
Alignment:
Q  339 ttacaaaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatatacca 417  Q
    |||||||||||||||||||| |||||||| | |||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  15531461 ttacaaaatgagtgaaagttcccactaatggggtggttacaaactatttatagtactatctattaggactaatatacca 15531539  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 15531586 - 15531648
Alignment:
Q  355 agtttccactaatagagtggttacaagctatttatggtactatttattagaactaatatacca 417  Q
    |||| |||||||| | ||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  15531586 agttcccactaattgggtggttacaagctatttatagtactatctattaggactaatatacca 15531648  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 41951693 - 41951768
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaa 307  Q
    |||||||||||| | |||||||||| ||||| ||||||| |||  |||| |||||||||  |||||||||||||||    
T  41951693 tatccttcaaggcggataccagattagctctaataccatgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 35309109 - 35309186
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaat 309  Q
    |||||||||||||| |||||||||| ||||||||||||| |||  |||| ||  |||||  |||||||||||| ||||    
T  35309109 tatccttcaaggtggataccagattagctctgataccatgttaggaaacatgatatccaatgaaggaatgagaaaaat 35309186  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 440
Target Start/End: Complemental strand, 10744885 - 10744725
Alignment:
Q  285 catccagagaaggaatgagagaaatattgcaaagctctttgta------gaatttgaatattacaaaatgagtgaaagtttccactaatagagtggttac 378  Q
    |||||| |||||||||||||||||| | | |||||||||||||      ||| |||||||||| ||| | ||||||| |  ||||||||   |||||| |    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaatt-agtgaaattgcccactaatgaggtggtttc 10744787  T
Q  379 aagctatttatggtactatttattagaactaatataccactaaacctatatctctaatacta 440  Q
    |||||||||||  |||||| |||||  |||||||||||||||| | ||||||||||||||||    
T  10744786 aagctatttatactactatatattaagactaatataccactaatcatatatctctaatacta 10744725  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 52737791 - 52737829
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccat 270  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52737791 tatccttcaaggtggataccagatttgctctgataccat 52737829  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 1136230 - 1136352
Alignment:
Q  272 ttataaaacttggcatccagagaaggaatgagagaaatattgcaaagctctttgta------gaatttgaatattacaaaatgagtgaaagtttccacta 365  Q
    |||| |||| || ||||||  ||||||||||||||||||| ||||| |||||| ||      ||| |||||||||||||| ||||||||||| |||||||    
T  1136230 ttatcaaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaa-tgagtgaaagtgtccacta 1136328  T
Q  366 atagagtggttacaagctatttat 389  Q
    || | |||| |||| |||||||||    
T  1136329 atggggtgggtacacgctatttat 1136352  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 8655790 - 8655865
Alignment:
Q  233 atccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    |||||||||||||  ||||||||  ||||||||||||| |||  |||| ||||||||| |||||||| ||||||||    
T  8655790 atccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccatagaaggaaggagagaaa 8655865  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 787475 - 787437
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccat 270  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  787475 tatccttcaaggtggataccatatttgctctgataccat 787437  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 4676336 - 4676261
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    |||||||||||||| ||||||| || |||||||||||||||||  |||| ||  |||||  ||||||||||||||||    
T  4676336 tatccttcaaggtggataccaggttagctctgataccatattaggaaacatgatatcca-cgaaggaatgagagaaa 4676261  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 24038439 - 24038363
Alignment:
Q  232 tatccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatccagagaaggaatgagagaaa 308  Q
    |||||||||||||| ||||||     ||||||||||||| ||| ||||| |||||||||  ||||||||||||||||    
T  24038439 tatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccatggaaggaatgagagaaa 24038363  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 438
Target Start/End: Original strand, 111613 - 111715
Alignment:
Q  334 gaatattacaaaatgagtgaaagtttccactaatagagtggttacaagctatttatggtactatttattagaactaatataccactaaacctatatctct 433  Q
    |||||||||||||||||  |||||| || ||||| | ||||||||||| |||||||  |||| | || ||| |||||||| | ||| || ||||||||||    
T  111613 gaatattacaaaatgag-aaaagttccctctaatggggtggttacaagttatttatactactctctactaggactaatatgctact-aatctatatctct 111710  T
Q  434 aatac 438  Q
    |||||    
T  111711 aatac 111715  T

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