View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_14 (Length: 428)
Name: NF9337_low_14
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 156 - 412
Target Start/End: Complemental strand, 28074084 - 28073828
Alignment:
| Q |
156 |
gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt |
255 |
Q |
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| T |
28074084 |
gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt |
28073985 |
T |
|
| Q |
256 |
ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgttatcattatattaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073984 |
ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgttatcattatattaa |
28073885 |
T |
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| Q |
356 |
gtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073884 |
gtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
28073828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 156 - 407
Target Start/End: Complemental strand, 28016950 - 28016718
Alignment:
| Q |
156 |
gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt |
255 |
Q |
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||||||| |||||||||||||| | ||||||||| | |||| ||||||| ||| ||| |||||||| ||||||||||||||||||| | | |
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| T |
28016950 |
gcaatttgctctttctatagagatgaggaaaagatcaacaacctaactataatgttaattaactaac---------tgaagtctaactaatttctacaat |
28016860 |
T |
|
| Q |
256 |
ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgttatcattatattaa |
355 |
Q |
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| T |
28016859 |
ttctaataaaccatattgatgaaacatgtttctcagtttctaccaggctaggtcagatgattattgctactt-tttcgaggcaagttatcat-------- |
28016769 |
T |
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| Q |
356 |
gtatagttatacctttgctttcagaagactgttcaagataccatcttagaag |
407 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
28016768 |
-tatagttgtacctttgctttcagaagaccgttcaagataccatattagaag |
28016718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 262 - 412
Target Start/End: Complemental strand, 28034648 - 28034498
Alignment:
| Q |
262 |
taaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgttatcattatattaagtatag |
361 |
Q |
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||||||||||||||||||||||| | | |||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |||||| |||||||| |
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| T |
28034648 |
taaaccatattgatgaaacatgtttctcagtttctatgaggctatattagatgataactgctacttcttttgaggcatgttatcgttatatcaagtatag |
28034549 |
T |
|
| Q |
362 |
ttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
412 |
Q |
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|| ||||||| |||| || ||||||||||||||||||| ||||||| |||| |
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| T |
28034548 |
ttgtacctttacttttagcagactgttcaagataccatgttagaagctctt |
28034498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 28090842 - 28090754
Alignment:
| Q |
324 |
acttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
412 |
Q |
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|
|||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28090842 |
acttctttggaggcatgttatcattatatcaagtatagttgtacctttgctttcagaagactgttcaagataccatcttagaagttctt |
28090754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 234 - 412
Target Start/End: Complemental strand, 27916321 - 27916142
Alignment:
| Q |
234 |
aagtctaactaatttctgtattttctaataaaccatattgatgaaacatgtattttagtttctagcag-gctatgccagatgattattgctacttctttt |
332 |
Q |
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||||||||||||||||| || |||||||||||| ||||||||| ||||||| | | |||||| | || || |||||| |||||||||||||||||| |
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| T |
27916321 |
aagtctaactaatttctataatttctaataaactatattgatggaacatgtttctccttttctattaatgccataccagattattattgctacttctttt |
27916222 |
T |
|
| Q |
333 |
gaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
412 |
Q |
| |
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|||||||||||||||||||| ||||||| || ||||||| |||||||||||||| |||||| ||| | ||||||| |||| |
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| T |
27916221 |
gaggcatgttatcattatatcaagtatacttgtaccttttctttcagaagactgctcaagaaaccgtattagaagctctt |
27916142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 300 - 412
Target Start/End: Complemental strand, 28001277 - 28001165
Alignment:
| Q |
300 |
aggctatgccagatgattattgctacttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccat |
399 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||| |||||||||||||| |
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| T |
28001277 |
aggccatgccatatgattattactacttcttttgaggcatgttatcattatatcaaatatagctatacctttgcttttagaagatcgttcaagataccat |
28001178 |
T |
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| Q |
400 |
cttagaagttctt |
412 |
Q |
| |
|
| |||||| |||| |
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| T |
28001177 |
cgtagaagctctt |
28001165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 28074229 - 28074138
Alignment:
| Q |
11 |
caaaggatgacagctgaagatttatctcataggtaaaataagcttgagannnnnnnnnngttggtagatatgcttgagagcttgatggagag |
102 |
Q |
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| T |
28074229 |
caaaggatgacagctgaagatttatctcataggtaaaataagcttgagattttttttttgttggtagatatgcttgagagcttgatggagag |
28074138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 28034832 - 28034798
Alignment:
| Q |
25 |
tgaagatttatctcataggtaaaataagcttgaga |
59 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28034832 |
tgaagatttatctcataggtaaaataagcttgaga |
28034798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 28533314 - 28533264
Alignment:
| Q |
362 |
ttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
412 |
Q |
| |
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|||||||||||||| | ||||| ||||||||||||||| | |||||||||| |
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| T |
28533314 |
ttatacctttgcttactgaagattgttcaagataccatgtaagaagttctt |
28533264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 1439500 - 1439430
Alignment:
| Q |
342 |
tatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttctt |
412 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1439500 |
tatcattatatcaagtatagttgtacctttgctttcaacagactgttcaagataccatcttagaagttctt |
1439430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 12240136 - 12240165
Alignment:
| Q |
193 |
acaaactaactaaaatcctaactaactaac |
222 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
12240136 |
acaaactaactaaaatcctaactaactaac |
12240165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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