View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_17 (Length: 405)
Name: NF9337_low_17
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 31107801 - 31107436
Alignment:
| Q |
20 |
tttcttgcatcgtaactgatctataaatttaaatacatatttctatgtacctcataattttcannnnnnnnn-aaaaaacaatacctcaagtagtcctca |
118 |
Q |
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| T |
31107801 |
tttcttgcatcgtaactgatctataaatttaaatacatatttctatgtacctcataattttcattttttttttaaaaaacaatacctcaagtagtcctca |
31107702 |
T |
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| Q |
119 |
acatctagttatattctggattttcagagattgctttgttaagtttgtagtatggctggtttagtggttaccttcatcatcatgctcgcttttcccaatc |
218 |
Q |
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| T |
31107701 |
acatctagttatattctggattttcagagattgctttgttaagtttgtagtatggctggtttagtggttaccttcatcatcatgctcgcttttcccaatc |
31107602 |
T |
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| Q |
219 |
aatttcacacaaaggcaatgacgcagacaaaatctcaatgaaaattttagtggcgtattcaacactttattctatttgactatttgtgcatgtggtaggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31107601 |
aatttcacacaaaggcaatgacgcagacaaaatctcaatgaaaattttagtggcgtattcaacactttattcta--------tttgtgcatgtggtaggt |
31107510 |
T |
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| Q |
319 |
tttcaattagaatgtttatttcagtttgcagaattgcagttgtgtattgtttctgttaagatcacttcggttct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31107509 |
tttcaattagaatgtttatttcagtttgcagaattgcagttgtgtattgtttctgttaagatcacttcggttct |
31107436 |
T |
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