View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_19 (Length: 376)
Name: NF9337_low_19
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 137 - 359
Target Start/End: Complemental strand, 33278329 - 33278107
Alignment:
| Q |
137 |
taccattccccttgaatacatttagcattaataccattcataagcttttctaattgatattgtttttataacagtcctcaagcaattttcaaggatccat |
236 |
Q |
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| T |
33278329 |
taccattaaccttggattcatttagcattaataccattcataagcttttctaattgatattgtttttataacagtcctcaagcaattttcaaggatccat |
33278230 |
T |
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| Q |
237 |
tcaggaggggaaagaatatcttggtacatttttcttcttgtctactatgttatgtaatttgtatatgatacacctttgttaaagttgaacaatttaattg |
336 |
Q |
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| T |
33278229 |
tcaggaggggaaagaatatcttggtacatttttcttcttgtctactatgttatgtaatttgtatatgatacacctttgttaaagttgaacaatttaattg |
33278130 |
T |
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| Q |
337 |
acattaggttatgtgtgatgcct |
359 |
Q |
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| T |
33278129 |
acattaggttatgtgtgatgcct |
33278107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 33278504 - 33278384
Alignment:
| Q |
19 |
ttgaaggcccttcaaagcttcccaagtggaactatgatggttccagcactggtcaagcttctggagatgatagtgaagtgatcttgcagtaagtctcttt |
118 |
Q |
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| T |
33278504 |
ttgaagacccttcaaagcttcccaagtggaactatgatggttccagcactggtcaagcttctggagatgatagtgaagtgatcttgcagtaagcctcttt |
33278405 |
T |
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| Q |
119 |
actttctgtaatttttattac |
139 |
Q |
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| T |
33278404 |
actttttgtaatttttattac |
33278384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 29443397 - 29443326
Alignment:
| Q |
26 |
cccttcaaagcttcccaagtggaactatgatggttccagcactggtcaagcttctggagatgatagtgaagt |
97 |
Q |
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| T |
29443397 |
cccttcacagcttcccaagtggaactatgatggttccagcacaggtcaagctcctggagaagatagtgaagt |
29443326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 29443194 - 29443147
Alignment:
| Q |
215 |
caagcaattttcaaggatccattcaggaggggaaagaatatcttggta |
262 |
Q |
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| T |
29443194 |
caagccattttcaaggatccattcagaaggggtaacaatatcttggta |
29443147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 7204982 - 7204915
Alignment:
| Q |
34 |
agcttcccaagtggaactatgatggttccagcactggtcaagcttctggagatgatagtgaagtgatc |
101 |
Q |
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| T |
7204982 |
agcttcctaagtggaactacgatggttctagcactggacaagcccctggtgaagatagtgaagtgatc |
7204915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 7193639 - 7193572
Alignment:
| Q |
34 |
agcttcccaagtggaactatgatggttccagcactggtcaagcttctggagatgatagtgaagtgatc |
101 |
Q |
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| T |
7193639 |
agcttcctaagtggaactatgatggatctagcactggacaagcccctggtgaagatactgaagtgatc |
7193572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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