View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_2 (Length: 743)
Name: NF9337_low_2
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_2 |
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| [»] scaffold0102 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 229 - 635
Target Start/End: Complemental strand, 36320110 - 36319708
Alignment:
| Q |
229 |
agctgttaaataaaacaaacagcaatgtggtgaagcacttgataatgtcgttcactctataaggaagacattttaattgtatggtgaaactctcacagtt |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36320110 |
agctggtaaataaaacaaacagcaatgtggtgaagcacttgataatgtcattcactctataaggaagacattttaattgtatggtgaaactctcacagtt |
36320011 |
T |
|
| Q |
329 |
cgaagttaaggttcaagtgttttgtgggcggcactaaatatttccaa--caagtgggtccaaataggaaaattgttggcatcaaaatcccatgatcaaca |
426 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36320010 |
caaagttaaggttcaagtgttttgtgggcggcactaaatatttccaacccaagtgggtccaaataggaaaattgttggcatcaaaatcccatgatcaaca |
36319911 |
T |
|
| Q |
427 |
agagctagactaaattgggtcttcctcaacatgtctttcattaaggtctctgtcacagtgaaagactttgatgaattccaaaatttatgattaggtccac |
526 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36319910 |
agagctagactaaattgggtcttcctcaacatgtctttcattaaggtctcagtcacggtgaaagac-ttgatgaattccaaaatttatgattaggtccac |
36319812 |
T |
|
| Q |
527 |
atctaatctgagtaggtgcacaccttcaccatttcacccaaacggtgatatagccaagccaaggtgaacaatgttttctttttctatgaacaccgttggc |
626 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36319811 |
atccaatctgagtaggtgcacaccttcaccatttcacccaaacggtgatat-----agccaaggtgaacaatgttttctttttctatgaacaccgttggc |
36319717 |
T |
|
| Q |
627 |
ttaaatcta |
635 |
Q |
| |
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||||||||| |
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| T |
36319716 |
ttaaatcta |
36319708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4696762 - 4696990
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4696762 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
4696861 |
T |
|
| Q |
101 |
ctatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4696862 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
4696961 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
4696962 |
atcttatttctcaacatcttcttctaata |
4696990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 4674506 - 4674659
Alignment:
| Q |
2 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4674506 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatga------atgtagaagttggttatgacagctatgtctaactaacttc |
4674599 |
T |
|
| Q |
102 |
tatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccac |
161 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4674600 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccac |
4674659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 654 - 709
Target Start/End: Complemental strand, 36319369 - 36319314
Alignment:
| Q |
654 |
aaaccttaataaccctaaaactaacaaagtattcagatctagaatttctatgaaat |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36319369 |
aaaccttaataaccctaaaactaacaaagtattcagatctagaatttctatgaaat |
36319314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 36332544 - 36332496
Alignment:
| Q |
387 |
aaataggaaaattgttggcatcaaaatcccatgatcaacaagagctaga |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36332544 |
aaataggaaaattgttggcatcaaaatcccatgatcaatcagagctaga |
36332496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 36311725 - 36311674
Alignment:
| Q |
388 |
aataggaaaattgttggcatcaaaatcccatgatcaacaagagctagactaa |
439 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| | ||||||||||||| |
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| T |
36311725 |
aatatgaaaattgttggcatcaaaaccccatgatcgagcagagctagactaa |
36311674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23415095 - 23415323
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
23415095 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctacctaactt |
23415194 |
T |
|
| Q |
101 |
ctatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23415195 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
23415294 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
23415295 |
atcttatttctcaacatcttcttctaata |
23415323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23419884 - 23420112
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
23419884 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctacctaactt |
23419983 |
T |
|
| Q |
101 |
ctatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23419984 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
23420083 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23420084 |
atcttatttctcaacatcttcttctaata |
23420112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6931 - 6703
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6931 |
gaaaaatgaagtgaaaaagattattgattgattcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctaactaactt |
6832 |
T |
|
| Q |
101 |
ctatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6831 |
ctgtctatctaaatgtaaatgaaatacaaatgaaattacatgtaaatgaggtaacttccacattcagcaaactaagaattctagctgctatttacgtgct |
6732 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6731 |
atcttatttctcaacatcttcttctaata |
6703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 2413 - 2350
Alignment:
| Q |
166 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaata |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2413 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaata |
2350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 14325978 - 14325812
Alignment:
| Q |
40 |
aattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttctatctatctaactgtaaaagaaatacaaatgaaattac |
139 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||| | || || || |||| ||||||||||||| |
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|
| T |
14325978 |
aattcttttacaatgagggtatatatagaagttggttataacaactaagtataactaacttctatctaaccaaatgaaactaaaatgcaaatgaaattac |
14325879 |
T |
|
| Q |
140 |
atgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgctatctt |
205 |
Q |
| |
|
|||| ||||||| ||| || ||| ||||||||||||||| |||| ||||||||||||| |||||| |
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|
| T |
14325878 |
atgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctatttacgtgttatctt |
14325812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 14418988 - 14418822
Alignment:
| Q |
40 |
aattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttctatctatctaactgtaaaagaaatacaaatgaaattac |
139 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||| | || || || |||| ||||||||||||| |
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|
| T |
14418988 |
aattcttttacaatgagggtatatatagaagttggttataacaactaagtataactaacttctatctaaccaaatgaaactaaaatgcaaatgaaattac |
14418889 |
T |
|
| Q |
140 |
atgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgctatctt |
205 |
Q |
| |
|
|||| ||||||| ||| || ||| ||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
14418888 |
atgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctatttacgtgttatctt |
14418822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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