View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_20 (Length: 359)
Name: NF9337_low_20
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 24618418 - 24618577
Alignment:
| Q |
79 |
tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618418 |
tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg |
24618517 |
T |
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| Q |
179 |
gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag |
238 |
Q |
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| T |
24618518 |
gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag |
24618577 |
T |
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Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 1344030 - 1344188
Alignment:
| Q |
79 |
tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg |
178 |
Q |
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||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
1344030 |
tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg |
1344129 |
T |
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| Q |
179 |
gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcata |
237 |
Q |
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| T |
1344130 |
gaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata |
1344188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 79 - 237
Target Start/End: Complemental strand, 1355557 - 1355399
Alignment:
| Q |
79 |
tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg |
178 |
Q |
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| T |
1355557 |
tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg |
1355458 |
T |
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| Q |
179 |
gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcata |
237 |
Q |
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|||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
1355457 |
gaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata |
1355399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 1355349 - 1355293
Alignment:
| Q |
283 |
cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatcatt |
339 |
Q |
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| T |
1355349 |
cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatcatt |
1355293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 1344238 - 1344291
Alignment:
| Q |
283 |
cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatc |
336 |
Q |
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| T |
1344238 |
cttatggacaaaactcttcttaatattagcaaatcttgttcaggattagaaatc |
1344291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 1361143 - 1361261
Alignment:
| Q |
82 |
tcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaa |
181 |
Q |
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|||||||||||||||| |||||||||||||||| | ||| || | ||||| ||||||||||||||||| ||||||||||| ||| || | ||| |
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| T |
1361143 |
tcctgtggttgagtttgatgatgagattgatcatgactt------aatgactgacaaagaagtggaagaatttgcgcgcagattaaattgtactcgcgaa |
1361236 |
T |
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| Q |
182 |
gagaggaaaatagaaattcttagag |
206 |
Q |
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||||| | || |||||||||||||| |
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| T |
1361237 |
gagagaataaaagaaattcttagag |
1361261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 1350615 - 1350687
Alignment:
| Q |
134 |
gacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagag |
206 |
Q |
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| T |
1350615 |
gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag |
1350687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 1361280 - 1361329
Alignment:
| Q |
274 |
atgagtaaccttatggacaaaactcttctcaa----tattagcaaatctt |
319 |
Q |
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| T |
1361280 |
atgagtaaccttatggataaaactcttctcaacaattattagcaaatctt |
1361329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 43364537 - 43364468
Alignment:
| Q |
99 |
atgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaa |
168 |
Q |
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||||||||||||||| || ||| || | || |||||| |||||||||||||||||||| ||||||||||| |
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| T |
43364537 |
atgatgagattgatccggccttacaagcaagaattgatagggaagtggaagaatttgcccgcagattaaa |
43364468 |
T |
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