View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_23 (Length: 351)
Name: NF9337_low_23
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_23 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 6921923 - 6922259
Alignment:
| Q |
1 |
cgagtgttcgtgatactccgcgaaataacaatcttgcatgcagaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattggtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6921923 |
cgagtgttcgtgatactccgcgaaataacaatcttgcatgcagaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattggtgg |
6922022 |
T |
|
| Q |
101 |
tatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922023 |
tatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagagga |
6922122 |
T |
|
| Q |
201 |
ttgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922123 |
ttgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcat |
6922222 |
T |
|
| Q |
301 |
cgacattagagattttatgtcgaggaacattaggact |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6922223 |
cgacattagagattttatgtcgaggaacattaggact |
6922259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 6948451 - 6948788
Alignment:
| Q |
2 |
gagtgttcgtgatactccgcg---aaataacaatcttgcatgcagaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattggt |
98 |
Q |
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|||||||| |||||||| ||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
6948451 |
gagtgttcatgatactcagcggtgaaagaagaatcttgtatgcagaccaatccattgcatgaaccaacaaccctaccagcgtccttgtaagggaattggt |
6948550 |
T |
|
| Q |
99 |
ggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagag |
198 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| ||||||||||||||| |
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| T |
6948551 |
ggtaaggatcggtaagggtgagagaatgtgagttactctccagcaagcgagagatggggactgtcctacattctgccgaacctttagacatgtttgagag |
6948650 |
T |
|
| Q |
199 |
gattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttc |
298 |
Q |
| |
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| |||||||||||| || ||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||| |||||| ||||||||||| |
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| T |
6948651 |
aaatgcgaggtgactcattggtgtagattgcttcttaaggtgcattttggcgaagtagggatcggatattagggttttccatgacttgcaaacacacttc |
6948750 |
T |
|
| Q |
299 |
atcgacattagagattttatgtcgaggaacattaggact |
337 |
Q |
| |
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||| ||||||||||||||| || ||||||| |||||||| |
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| T |
6948751 |
atcaacattagagattttacgt-gaggaacgttaggact |
6948788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 6935806 - 6936076
Alignment:
| Q |
22 |
gaaataacaatcttgcatgcagaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattggtggtatggatcggtaagggttata |
121 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| | | || ||| |||||| ||| |
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| T |
6935806 |
gaaagaacaatcttgtatgcagaccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaattggttggaagggacggcaagggtgata |
6935905 |
T |
|
| Q |
122 |
gaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagaggattgcgaggtgacttgttcgtg |
221 |
Q |
| |
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|||| || ||| ||||| ||||| |||||||||||| || ||||||||| | || ||| | | |||||| ||| | ||||||| ||| |
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| T |
6935906 |
gaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatctttataattgtttgtgagaaaagcgaggt---------gtg |
6935996 |
T |
|
| Q |
222 |
tagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcatc |
301 |
Q |
| |
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|||||||||||||| ||||| ||||| | ||||| ||||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
6935997 |
tagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatc |
6936076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 6955110 - 6955153
Alignment:
| Q |
22 |
gaaataacaatcttgcatgcagaccaatccattgcatgaaccaa |
65 |
Q |
| |
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|||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
6955110 |
gaaagaacaatcttgcatgcagaccaacccattacatgaaccaa |
6955153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 1986528 - 1986865
Alignment:
| Q |
1 |
cgagtgttcgtgatactccgc---gaaataacaatcttgcatgcagaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattgg |
97 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1986528 |
cgagtgtttgtgatactcagcagtgaaagaacaatcttgaatacagaccaatccattgcatgaaccaacaaccctaccagcgtccttgtaaaagaattgg |
1986627 |
T |
|
| Q |
98 |
tggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgaga |
197 |
Q |
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||||| |||||||||||||| |||||||||||||||||| |||| || |||||||| |||| | ||||||||||||||||||||| ||| |||||||||| |
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| T |
1986628 |
tggtaaggatcggtaagggtgatagaatgtgagttactcaccagtaagcgagagataggca-ttccctacattctcccgaacctttagatatgtttgaga |
1986726 |
T |
|
| Q |
198 |
ggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacactt |
297 |
Q |
| |
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| | |||| ||||||| || ||||||||||||| ||||||||||||||||| |||| ||||| | |||||||||||||| |||||| |||||||||| |
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| T |
1986727 |
gaaatgcggggtgactcattggtgtagattgctt-ttaaggtgcattttggcgaagtagggatgggatattagggttttccatgacttgcaaacacactt |
1986825 |
T |
|
| Q |
298 |
catcgacattagagattttatgtcgaggaacattaggact |
337 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||| |
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| T |
1986826 |
catcaacattagagattttacgtcgaggaacgttaggact |
1986865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 335
Target Start/End: Original strand, 13417640 - 13417838
Alignment:
| Q |
137 |
tccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagaggattgcgaggtgacttgttcgtgtagattgcttcttaa |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| ||||||| | ||| ||||| | |||||||||||||| |||||| |
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|
| T |
13417640 |
tccagcaaacgagagatgggtactgccctacaatctaccgaaccttgggacatttttgagaaaagtgctaggtgtgtcattcgtgtagattgcctcttaa |
13417739 |
T |
|
| Q |
237 |
ggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcatcgacattagagattttatgtcgaggaacattagga |
335 |
Q |
| |
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||||||||||| | ||| ||||| ||| |||||||||||| |||||| | |||||||||||| || |||||||||| || |||||| |||||| |
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| T |
13417740 |
ggtgcattttgacgaagagtggatcagagaatagggttttccacgacttgcatacacacttcatccttatcagagattttacatcaaggaacgttagga |
13417838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 15572502 - 15572735
Alignment:
| Q |
20 |
gcgaaataacaatcttgcatgcagaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattggtggtatggatcg------gtaa |
113 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| | |||||| || |||| |||||| |||||| | || |
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| T |
15572502 |
gcgaaagaacaactttgcaagcagaccaatccattgcatgaaccaacaaccccaccaccgtccttgaaattgaatcagtggtaaggatcgtcgtcgggaa |
15572601 |
T |
|
| Q |
114 |
gggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaaccttcagacatgtttgagaggattgcgaggtgact |
213 |
Q |
| |
|
||||||| |||| || || | |||| |||||||||| | || ||||||||||| ||||| |||||||||||| ||| || || ||||| || ||| | |
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|
| T |
15572602 |
gggttatggaattcgaagtagtttccaacaaacgagaggtcggtactgccctacaatctccggaaccttcagacttgtctgtgaaaattgcaagatgagt |
15572701 |
T |
|
| Q |
214 |
tgttcgtgtagattgcttcttaaggtgcattttg |
247 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| |
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|
| T |
15572702 |
cattcgcgtagaatgcttcttaaggtgcattttg |
15572735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 18515576 - 18515624
Alignment:
| Q |
139 |
cagcaaacgagagatgggcactgccctacattctcccgaaccttcagac |
187 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||| ||||| |||||||||||| |
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|
| T |
18515576 |
cagcaaacgagaaatgggtactgctctacaatctccggaaccttcagac |
18515624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 80 - 335
Target Start/End: Complemental strand, 161330 - 161075
Alignment:
| Q |
80 |
tccttgtaaaagaattggtggtatggatcggtaagggttatagaatgtgagttactctccagcaaacgagagatgggcactgccctacattctcccgaac |
179 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| |||||| || || ||||| ||||||||||||||| | ||| |||| || || |||| |
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| T |
161330 |
tccttgtaattgaattggtggtaaggatcagtaagggtgatagaactcgaagaacactccatcaaacgagagatgggtgcagccatacaatcaccagaac |
161231 |
T |
|
| Q |
180 |
cttcagacatgtttgagaggattgcgaggtgacttgttcgtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttcca |
279 |
Q |
| |
|
||||| || |||||||||| | |||||||| | ||| ||||||||| ||||||| |||||||||| | ||| | ||||| |||||||||||||||| |
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|
| T |
161230 |
cttcaaacttgtttgagagaaaagcgaggtgtgtcattcctgtagattgtttcttaaagtgcattttgacgaagactggatcggagattagggttttcca |
161131 |
T |
|
| Q |
280 |
agacttggaaacacacttcatcgacattagagattttatgtcgaggaacattagga |
335 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||| ||| |||||| |||||| |
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|
| T |
161130 |
agacttgcaaacacacttcatctgcataagagattttacgtcaaggaacgttagga |
161075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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