View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_24 (Length: 319)
Name: NF9337_low_24
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 27024837 - 27025137
Alignment:
| Q |
19 |
cattctcgccggagaagtcaacatcattcttctcagagcactggtatttccgattgtttttctttgcgttttcagtaactgtgtgaaattcttgatattg |
118 |
Q |
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| T |
27024837 |
cattctcgccggagaagccaacatcattcttctcagagcactggtatttccgattgtttttctttgcgtgatcagtaactgtgtgcaattcttgatattg |
27024936 |
T |
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| Q |
119 |
caatgaatcgcgttttcaatcccacattcttcataaaatgcagtttcattggttgaatgatcttgcttaggatccttcttgttttgattctcttgacatt |
218 |
Q |
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| T |
27024937 |
caatgaatcgcgttttcaatcccacattcttcataaaatgcagtttcaatggttgaatgatcttgcttaggatccttcttgttttgattctcttgacatt |
27025036 |
T |
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| Q |
219 |
ttttattctcttcacgttatcatttgatgcannnnnnnnnnnnnnnnnnngcaatataagaattgcacactgtttttcttctccaaaacattcttctttt |
318 |
Q |
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| T |
27025037 |
ttttattctcttcacgttatcatttgatgcattttgtttttcgattttttgcaatataagaattgcacactgtttttcttctccaaagcattcttctttt |
27025136 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
27025137 |
t |
27025137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 26985015 - 26985223
Alignment:
| Q |
18 |
gcattctcgccggagaagtcaacatcattcttctcagagcactggtatttccgattgtttttctttgcgttttcagtaact-----gtgtgaaattcttg |
112 |
Q |
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| T |
26985015 |
gcattctcgccggagaagccaacatcattcttctcagagcactggtatttccgattgtttttctgtg--ttttcagtaacataacagtgtgcaattcttg |
26985112 |
T |
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| Q |
113 |
----atattgcaatgaatcgcgttttcaatcccacattcttcataaaatgcagtttcattggttgaatgatctt-gcttaggatccttcttgttttgatt |
207 |
Q |
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| T |
26985113 |
cttgatattgcaatgaattgcgttttcgatctcacattcttcataaaatgcagtttcagtggttgaatgatcttcgcttatagtccttgttgttttgatt |
26985212 |
T |
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| Q |
208 |
ctcttgacatt |
218 |
Q |
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| T |
26985213 |
ctcttaacatt |
26985223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 27080383 - 27080219
Alignment:
| Q |
56 |
gcactggtatttccgattgttttt-ctttgcgttttcagtaactgtgtgaaattcttgatattgcaatgaatcgcgttttcaatcccacattcttcataa |
154 |
Q |
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|||||||||||||||||| ||||| || || |||||||||| | ||||| ||||||||||||| ||||||||| ||||||||||| ||||||||| |||| |
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| T |
27080383 |
gcactggtatttccgatttttttttctctgtgttttcagtaccagtgtgcaattcttgatattacaatgaatcacgttttcaatctcacattcttgataa |
27080284 |
T |
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| Q |
155 |
aatgcagtttcattggttg-aatgatc-ttgcttaggatccttcttgttttgattctcttgacat |
217 |
Q |
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| T |
27080283 |
aatgttgtttcaatggtagaaatgatctttgcttacggtccttgttgttttgattctcttaacat |
27080219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 34687070 - 34687274
Alignment:
| Q |
18 |
gcattctcgccggagaagtcaacatcattcttctcagagcactggtatttccgattgtttttctttgcgttttcagtaact-----gtgtgaaattcttg |
112 |
Q |
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| T |
34687070 |
gcattctcgccggcgaagccaacatcattcttctcagagcactggtatttccgattgtttttctgtg--ttttcagtaacataacagtgtgcaattcttg |
34687167 |
T |
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| Q |
113 |
atattgcaatgaatcgcgttttcaatcccacattcttcataaaatgcagtttcattggttgaatgatctt-gcttaggatccttcttgttttgattctct |
211 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||| ||||| | ||||| ||||||||||||||| |
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| T |
34687168 |
atattgcaatgaatcgcgttttcgatctcacattcttcataaaatgtagtttcagtggttgaatgatcttcgcttatggtccttgttgttttgattctct |
34687267 |
T |
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| Q |
212 |
tgacatt |
218 |
Q |
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| T |
34687268 |
taacatt |
34687274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 30227492 - 30227659
Alignment:
| Q |
43 |
cattcttctcag-agcactggtatttccgattgtttttctttgcgttttcagtaactgtgtgaaattcttgatattgcaatgaatcgcgttttcaatccc |
141 |
Q |
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|||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |
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| T |
30227492 |
cattcttctccgcagcactggtatttcggattgtttttctttgcgttttcagtaa----------ttcttgatattacaatgaatcgcgttttcaatctc |
30227581 |
T |
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| Q |
142 |
acattcttcataaaatgcagtttcattggttgaatgatctt-gcttaggatccttcttgttttgattctcttgacatt |
218 |
Q |
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|||||||||||||||||| |||||| ||||| ||||||||| |||| | ||||| |||||||||||||||| ||||| |
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| T |
30227582 |
acattcttcataaaatgctgtttcaatggttcaatgatcttcacttaaggtccttgttgttttgattctcttaacatt |
30227659 |
T |
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