View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_25 (Length: 310)
Name: NF9337_low_25
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 18660465 - 18660746
Alignment:
| Q |
20 |
atcgctcattattgcaacatcttcatcgcttgtaaactgcgttgattagcttatcttgatgtacaaaccttactaaaacaaagtaagatgctgaattcct |
119 |
Q |
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| T |
18660465 |
atcgctcattatcgcaacatcttcatcgcttgtaaactgcgttgattagcttatcttgatgtacaaaccttactaaaacaaagtaagatgctgaattcct |
18660564 |
T |
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| Q |
120 |
gctaaagaaatatgtttggagttgtgaatccacgttttccctattcaagaatctctacaattaaggtttccccgtctagcagtttgattgaagttgaacg |
219 |
Q |
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| T |
18660565 |
gctaaagaagtatgtttggagttgtgaatccacgtgttccctattcaagaatctctacaattaaggtttccccgtctagcagtttgattgaagttgaacg |
18660664 |
T |
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| Q |
220 |
gaatattatttttgtgaaaacaatttatgccattcagattatatgtcgattttaatatgaaagttgactagttgagtataat |
301 |
Q |
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| T |
18660665 |
gaatattatttttgtgaaaacaatttatgccattcagatcatatgtcgattttaatatgaaagttgactagttgagtataat |
18660746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 22977479 - 22977762
Alignment:
| Q |
20 |
atcgctcattattgcaacatcttcatcgcttgtaaactgcgttgattagcttatcttgatgtacaaaccttactaaaacaaagtaagatgctgaattcct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977479 |
atcgctcattattgcaacatcttcatcgcttgtaaactgcgttgattagcttatcttgatgtacaaaccttactaaaacaaagtaagatgctgaattcct |
22977578 |
T |
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| Q |
120 |
gctaaagaaatatgtttggagttgtgaatccacgttttccctattcaagaatctctacaattaaggtttccccgtctagcagtttgattgaagttgaacg |
219 |
Q |
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||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977579 |
gctaaagaagtatgtttggagttgtgaatccatgtgttccctattcaagaatctctacaattaaggtttccccgtctagcagtttgattgaagttgaacg |
22977678 |
T |
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| Q |
220 |
gaatattatttttgtgaaaacaatttatgccattcagattatatgtcgattttaatatgaaagttgac--tagttgagtataat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
22977679 |
gaatattatttttgtgaaaacaatttatgccattcagattatatgttgattttaatatgaaagttgactatagttgagtataat |
22977762 |
T |
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