View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_26 (Length: 305)
Name: NF9337_low_26
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 6641726 - 6641997
Alignment:
| Q |
18 |
ctctttttaggcgaaagagattataatcattagaattcgctttttaaaatttatttcaactaagacttaaaacatgagttttttnnnnnnnnntcacatg |
117 |
Q |
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| T |
6641726 |
ctctttttaggcgaaagagattataatcattagaattcgctttttaaaatttatttaaa---------aaaacatgagttttgttttaaaaaatcacatg |
6641816 |
T |
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| Q |
118 |
taatcgaccatttaatattttatctgttatatttaaatacatctttgggctcttcctatatattaaagtagatacgaatgtcaatgctttttcaagctga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6641817 |
taatcgaccatttaatattttatctgttatatttaaatacatctttgggctcttcctatatattaaagtagatacgaatgtcaatgctttttcaagctga |
6641916 |
T |
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| Q |
218 |
tctgtataagtcagaggaattaaaccaagctctatattttaattgaagctacttcgcctcaatcaacatcgtcctttgctt |
298 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6641917 |
tctgtataagtctgaggaattaaaccaagatctatattttaattgaagctactttgcctcaatcaacatcgtcctttgctt |
6641997 |
T |
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