View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_30 (Length: 290)
Name: NF9337_low_30
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_30 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0736 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 2741687 - 2741960
Alignment:
| Q |
16 |
aggaacagagtgatatgaagattgaagatcttcaaaggacacttgaatctcaggagaggaggttgccggaagaagagatgaaagacaagacgaacaaact |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2741687 |
aggaacacagtgatatgaagattgaagatcttcaaaggacacttgaatctcacgagaggaggttaccggaagaagagatgaaagacaagacgaacaaact |
2741786 |
T |
|
| Q |
116 |
aacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaaacacgttattttgnnnnnnnnnnnnnnnnnnn |
215 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||||| |
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| T |
2741787 |
aacatcgaattattataaaatactaaaaccattaaagatggagggtatagttgtcttaaaattctaaaacacgttattttgaaacaaaaataaaacacaa |
2741886 |
T |
|
| Q |
216 |
nnnccactaaagatttggaatgaaagatgaatttaatcagtatattttatcagtgtacaattattttacacata |
289 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||| |
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| T |
2741887 |
aaaccactaaagatttggaatgaaagaagaatttaattagtatattttgtcggtgtacaattattttacacata |
2741960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 93 - 290
Target Start/End: Original strand, 2741964 - 2742161
Alignment:
| Q |
93 |
atgaaagacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaaacacgttat |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2741964 |
atgaaagacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaaacacgttat |
2742063 |
T |
|
| Q |
193 |
tttgnnnnnnnnnnnnnnnnnnnnnnccactaaagatttggaatgaaagatgaatttaatcagtatattttatcagtgtacaattattttacacatac |
290 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
2742064 |
tttgaaacaaaaataaaacacaaaaaccactaaagatttggaatgaaagatgaatttaatcagtatattctgtcagtgtacaattattttacacatac |
2742161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 2741355 - 2741559
Alignment:
| Q |
84 |
gaagaagagatgaaagacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaa |
183 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
2741355 |
gaagaagatatgaaaaacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatgga-ggtatagttgtcttgaaattctaaa |
2741453 |
T |
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| Q |
184 |
acacgttattttgnnnnnnnnnnnnnnnnnnnnnnccactaaagatttggaatgaaagatgaatttaatcagtatattttatcagtgtacaattatttta |
283 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||| |
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| T |
2741454 |
acacgttattttgaaacaaaaataaaacacaaaaaccactaaagatttggaatgaaagaagaatttaattactatattttgtcagtgtacaattatttta |
2741553 |
T |
|
| Q |
284 |
cacata |
289 |
Q |
| |
|
|||||| |
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|
| T |
2741554 |
cacata |
2741559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 41816886 - 41816926
Alignment:
| Q |
245 |
aatttaatcagtatattttatcagtgtacaattattttaca |
285 |
Q |
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|||||||||||||||||||||| || ||||||||||||||| |
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| T |
41816886 |
aatttaatcagtatattttatcggtttacaattattttaca |
41816926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 40288259 - 40288213
Alignment:
| Q |
244 |
gaatttaatcagtatattttatcagtgtacaattattttacacatac |
290 |
Q |
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|||||||||||||||||||| | | | |||||||||||||||||||| |
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| T |
40288259 |
gaatttaatcagtatattttgttaatatacaattattttacacatac |
40288213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 19853977 - 19853932
Alignment:
| Q |
245 |
aatttaatcagtatattttatcagtgtacaattattttacacatac |
290 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
19853977 |
aatttaattagtatattttatcggtgtataattagtttacacatac |
19853932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 32650311 - 32650267
Alignment:
| Q |
244 |
gaatttaatcagtatattttatcagtgtacaattattttacacat |
288 |
Q |
| |
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||||||||| |||||| ||||| |||||| ||||||||||||||| |
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| T |
32650311 |
gaatttaattagtatagtttatgagtgtataattattttacacat |
32650267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0736 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0736
Description:
Target: scaffold0736; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 749 - 794
Alignment:
| Q |
245 |
aatttaatcagtatattttatcagtgtacaattattttacacatac |
290 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||||||||||| |
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| T |
749 |
aatttaattagtatattttatcggtgtataattagtttacacatac |
794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 1955419 - 1955374
Alignment:
| Q |
245 |
aatttaatcagtatattttatcagtgtacaattattttacacatac |
290 |
Q |
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|||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
1955419 |
aatttaattagtatacattgtcagtgtacaattattttacacatac |
1955374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 7337575 - 7337620
Alignment:
| Q |
242 |
atgaatttaatcagtatattttatcagtgtacaattattttacaca |
287 |
Q |
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|||| |||||| |||||||||| | ||||||||||||||||||||| |
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| T |
7337575 |
atgagtttaattagtatattttgtgagtgtacaattattttacaca |
7337620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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