View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9337_low_31 (Length: 290)

Name: NF9337_low_31
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9337_low_31
NF9337_low_31
[»] chr4 (5 HSPs)
chr4 (7-272)||(10483257-10483522)
chr4 (12-122)||(10469451-10469560)
chr4 (219-265)||(38108084-38108130)
chr4 (219-265)||(38117708-38117754)
chr4 (219-259)||(263685-263725)
[»] chr3 (1 HSPs)
chr3 (219-272)||(47542535-47542588)
[»] chr5 (2 HSPs)
chr5 (221-272)||(28322241-28322292)
chr5 (220-272)||(18542217-18542270)
[»] chr8 (1 HSPs)
chr8 (219-265)||(29096953-29096999)
[»] chr6 (2 HSPs)
chr6 (215-265)||(18803254-18803304)
chr6 (219-259)||(32577470-32577510)
[»] chr7 (1 HSPs)
chr7 (214-259)||(27012137-27012182)
[»] chr1 (1 HSPs)
chr1 (215-264)||(43609820-43609869)
[»] chr2 (1 HSPs)
chr2 (190-265)||(29931716-29931792)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 10483257 - 10483522
Alignment:
Q  7 ttggtggtgcttgaaaatgtgtccattttgagtttaaccatggaaattatgtttgtctattcaactattctttcacttctgctcctgtttttaaccatct 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10483257 ttggtggtgcttgaaaatgtgtccattttgagttcaaccatggcaattgtgtttgtctattcaactattctttcacttctgctgctgtttttaaccatct 10483356  T
Q  107 gggttgtgttctcctctttgtatatattcattgggaaaacttgtacgctctgaagcattaaattttttagtgaaggtgtggcatgtgtctgacatgcgtc 206  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  |     |  || | | ||||||| ||||||||||||||||||||||||||||||    
T  10483357 gggttgtgttctcctctttgtatatattcattggg-aaacatgt--gaatacattcaattagttttttattgaaggtgtggcatgtgtctgacatgcgtc 10483453  T
Q  207 ggtgtatgacatcg--acacatgtgaatacattcaattagtttattttctcaaa-taattactagtgtc 272  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10483454 ggtgtaggacatcgacacacatgtgaatacattcaattagtttattttctcaaattaattactagtgtc 10483522  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 10469451 - 10469560
Alignment:
Q  12 ggtgcttgaaaatgtgtccattttgagtttaaccatggaaattatgtttgtctattca---actattctttcacttctgctcctgtttttaaccatctgg 108  Q
    ||||||||||||||||| |||||||| ||||||||| | |||| ||||||||||||||      |  ||| |||    ||||||||||||||||||||||    
T  10469451 ggtgcttgaaaatgtgttcattttgaatttaaccatagtaattgtgtttgtctattcattggaaaaacttgcac----gctcctgtttttaaccatctgg 10469546  T
Q  109 gttgtgttctcctc 122  Q
    ||||||||||||||    
T  10469547 gttgtgttctcctc 10469560  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 38108130 - 38108084
Alignment:
Q  219 cgacacatgtgaatacattcaattagtttattttctcaaataattac 265  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38108130 cgacagatgtcaatacattcaattagtttattttctcaaattattac 38108084  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 38117754 - 38117708
Alignment:
Q  219 cgacacatgtgaatacattcaattagtttattttctcaaataattac 265  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38117754 cgacagatgtcaatacattcaattagtttattttctcaaattattac 38117708  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 263685 - 263725
Alignment:
Q  219 cgacacatgtgaatacattcaattagtttattttctcaaat 259  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  263685 cgacagatgtcaatacattcaattagtttattttctcaaat 263725  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 47542588 - 47542535
Alignment:
Q  219 cgacacatgtgaatacattcaattagtttattttctcaaataattactagtgtc 272  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||| ||||||    
T  47542588 cgacacatgtgattacattcaaatagttcattttctcaaattattaccagtgtc 47542535  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 28322292 - 28322241
Alignment:
Q  221 acacatgtgaatacattcaattagtttattttctcaaataattactagtgtc 272  Q
    |||||||||| |||||||||||| || |||||||||||| || |||||||||    
T  28322292 acacatgtgattacattcaattaattcattttctcaaattatcactagtgtc 28322241  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 18542217 - 18542270
Alignment:
Q  220 gacacatgtgaatacattcaattagtt-tattttctcaaataattactagtgtc 272  Q
    ||||||||||| |||||||||||| || ||||||||||||| |||||| |||||    
T  18542217 gacacatgtgattacattcaattacttgtattttctcaaattattactggtgtc 18542270  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 29096999 - 29096953
Alignment:
Q  219 cgacacatgtgaatacattcaattagtttattttctcaaataattac 265  Q
    |||||||||||| |||||||||||| |||||||||| |||| |||||    
T  29096999 cgacacatgtgattacattcaattaatttattttcttaaattattac 29096953  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 18803304 - 18803254
Alignment:
Q  215 acatcgacacatgtgaatacattcaattagtttattttctcaaataattac 265  Q
    |||| ||||||||||| ||||||||||||  | ||||||||||||||||||    
T  18803304 acattgacacatgtgattacattcaattatgtaattttctcaaataattac 18803254  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 32577470 - 32577510
Alignment:
Q  219 cgacacatgtgaatacattcaattagtttattttctcaaat 259  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  32577470 cgacacatgtgattacattcaattaattcattttctcaaat 32577510  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 27012182 - 27012137
Alignment:
Q  214 gacatcgacacatgtgaatacattcaattagtttattttctcaaat 259  Q
    ||||| |||||||||||||||||| ||||| || ||||||||||||    
T  27012182 gacatagacacatgtgaatacatttaattaattcattttctcaaat 27012137  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 43609820 - 43609869
Alignment:
Q  215 acatcgacacatgtgaatacattcaattagtttattttctcaaataatta 264  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||| ||||    
T  43609820 acatggacacatgtgattacattcaattatgttattttctcaaattatta 43609869  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 29931716 - 29931792
Alignment:
Q  190 tgtgtctgacatgcgtcggtgtatgacatcgacacatgtgaatacattcaattagt-ttattttctcaaataattac 265  Q
    ||||||||||||| ||||||||  ||||  ||||||||||| |||||||| ||| | | |||||||||||| |||||    
T  29931716 tgtgtctgacatgtgtcggtgttagacactgacacatgtgattacattcagttactctcattttctcaaattattac 29931792  T

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