View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_33 (Length: 284)
Name: NF9337_low_33
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 42771150 - 42771421
Alignment:
| Q |
4 |
atacaattgtaatttaacccttcttttacaaaaggaattaagccttttacccattatacatcatgaagtggtgggtgaaaacatgtat--aataattgaa |
101 |
Q |
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| T |
42771150 |
atacaattgtaatttaacccttcttttacaaaaggaattaagctttttacccattatacatcatgaagtggtgggtgaaaacatgtattaaataattgaa |
42771249 |
T |
|
| Q |
102 |
acgtgtataacaataacaacatctatcaaatggttttaatttgtc-nnnnnnncatctatcaaatggttcaaatcatgtctcataaggcacattgcattc |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42771250 |
acgtgtataacaataataacatctatcaaatggttttaatttgtcaaaaaaaacatctatcaaatggttcaaatcatgtctcataaggcacattgcattc |
42771349 |
T |
|
| Q |
201 |
aaatgaaagaataaataaattctaaattaattaccagtgtctaaatttccaataatgatatcttctcctttg |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42771350 |
aaatgaaagaataaataaattcaaaattaattaccagtgtctaaattcccaataatgatatcttctcctttg |
42771421 |
T |
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