View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_34 (Length: 284)
Name: NF9337_low_34
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 3456125 - 3456393
Alignment:
| Q |
2 |
tttcaacttacaactcatctttaaatactacggtccagtttacgacactgagtcggccttttagattgaaaaattcataacatttgcaaaaacacatttc |
101 |
Q |
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| T |
3456125 |
tttcaaattacaactcatgtttaaatactatggtccactttacaacactgagtcggcctttaaaattgaaaaattcattacatttgcaaaaacaaattta |
3456224 |
T |
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| Q |
102 |
gcatccaaaatgatgaatcaactaaaacttcaatagaaaatatataatttaactattacacatgacatggaagtattgaattatatgtcatgctatacac |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||| || || |||||| |
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| T |
3456225 |
gcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattacacataacatggaagttttgaattatatgacaagccatacac |
3456324 |
T |
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| Q |
202 |
caagattttttgcaagtaatgtcaggtaaagaagaaataaacacaatactcactgtaatatacctgatg |
270 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456325 |
caagtttttttgcaagtaatatcaggtaaagaagaaataaacacaatactcactgtaatatacctgatg |
3456393 |
T |
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