View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9337_low_38 (Length: 265)
Name: NF9337_low_38
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 42771150 - 42771294
Alignment:
| Q |
116 |
atacaattgtaatttaacccttcttttacaaaaggaattaagccttttacccattatacatcatgaagtggtgggtgaaaacatgtat--aataattgaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42771150 |
atacaattgtaatttaacccttcttttacaaaaggaattaagctttttacccattatacatcatgaagtggtgggtgaaaacatgtattaaataattgaa |
42771249 |
T |
|
| Q |
214 |
acgtgtataacaataacaacatctatcaaatggttttaatttgtc |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42771250 |
acgtgtataacaataataacatctatcaaatggttttaatttgtc |
42771294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 42771025 - 42771104
Alignment:
| Q |
21 |
atatatctatgaataattttagctacatatctttaaaaattggtaaatggatgctaacttatacaattgtaattttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42771025 |
atatatctatgaataattttagctacatatctttaaaaattggtaaatggatgctaacttatacaattgtaattctcctt |
42771104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University