View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_4 (Length: 657)
Name: NF9337_low_4
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 641
Target Start/End: Complemental strand, 1598167 - 1597543
Alignment:
| Q |
17 |
attaaaaaagtttactctgtcaagtacatagtctttaaactccaaaattagttgttagattaaaagtaaattttgatatttagtttttgctttaggcacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1598167 |
attaaaaaagtttactctgtcaagtacatagtctttaaactccaaaattagttgttagattaaaagtaaattttgatatttagtttttcctttaggcacc |
1598068 |
T |
|
| Q |
117 |
ttgggtgttattctacatgcattttctcctgttaaaggtccctcaaaatctctcgcagaaggaaacttccgtggctcgaaaacactcgcggaaacaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1598067 |
ttgggtgttattctacatgcattttctcctattaaaggtccctcaaaatctctcgcagaaggaaacttccgtggctcgaaaacactcgcggaaacaaaat |
1597968 |
T |
|
| Q |
217 |
tttgtgcagtcacggacttgatggaagtctgcaaaaaatatagtacatatcaagccattgaagaacttcatgtcacatccgaacgggagtgcgtgagagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1597967 |
tttgtgcagtcacggacttgatggaagtctgcaaaaaatatagtacatatcaagccattgaagaacttcatgtcacatccgaacgggagtgcgtgagagt |
1597868 |
T |
|
| Q |
317 |
tttggatcaagagaagtaaatagtcacttaaatttgccaaacgaaactacacaaaagagagcatactaatactagaaactgatgtgaacatgaaattaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1597867 |
tttggatcaagagaagtaaatagtcacttaaatttgccaaacgaaactacacaaaagagagcatactaatactagaaactgatgtgaacatgaaattaga |
1597768 |
T |
|
| Q |
417 |
actcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatcttttcacagataccaatgaacggaac |
516 |
Q |
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| T |
1597767 |
actcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatcttttcacagataccaatgaacggaac |
1597668 |
T |
|
| Q |
517 |
ttctgtcctgtgtgtggctctatgtaacactagaagaaaataaataagattcaaaattaattgatagaatggtctcaaaacacattcaacccagcaatcc |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1597667 |
ttctgtcctgtgtgtggctctatgtaacactagaagaaaataaataagattcaaaattaattgatagaatggtctcaaaacacattcaactcagcaatcc |
1597568 |
T |
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| Q |
617 |
tacacaattgtcgcattgtctgtgc |
641 |
Q |
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||||||||||||||||||||||||| |
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| T |
1597567 |
tacacaattgtcgcattgtctgtgc |
1597543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 392 - 543
Target Start/End: Complemental strand, 1596993 - 1596842
Alignment:
| Q |
392 |
aaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatct |
491 |
Q |
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|||||||| | |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
1596993 |
aaactgatctaaacatgaaattagaactcacagtgtttttgttttctgatatcattctgtcagtaggaaggtagtctcttgtttctgcatttagatatct |
1596894 |
T |
|
| Q |
492 |
tttcacagataccaatgaacggaacttctgtcctgtgtgtggctctatgtaa |
543 |
Q |
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| |||||| |||| ||||||||||| ||||| ||| | ||||||| |||| |
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| T |
1596893 |
ctggacagatgccaaagaacggaacttatgtccagtgcgcggctctaagtaa |
1596842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 556052 - 555967
Alignment:
| Q |
406 |
atgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatct |
491 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||| || |||||||| |
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| T |
556052 |
atgaaattagaactcacggtgtctttgtcttctgatatcactctaccagtaggaggattgtctcttgtttctttattaagatatct |
555967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 385 - 477
Target Start/End: Complemental strand, 554971 - 554881
Alignment:
| Q |
385 |
atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttct |
477 |
Q |
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||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
554971 |
atactagaaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttct |
554881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 556361 - 556320
Alignment:
| Q |
23 |
aaagtttactctgtcaagtacatagtctttaaactccaaaat |
64 |
Q |
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| T |
556361 |
aaagtttacactgtcaagtacatggtctttaaactccaaaat |
556320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 385 - 547
Target Start/End: Original strand, 41218837 - 41219001
Alignment:
| Q |
385 |
atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgttt---ctttgt |
481 |
Q |
| |
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|||||||||||||| || ||||||||||| |||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| |||||| || | |
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| T |
41218837 |
atactagaaactgacgtaaacatgaaatt-gaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtcttttgtttctcctccat |
41218935 |
T |
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| Q |
482 |
tgagatatcttttcacagataccaatgaacggaacttctgtcctgtgtgtggctctatgtaacact |
547 |
Q |
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| |||||||| | ||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
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| T |
41218936 |
ttagatatctgtgaacagataccaaagaacggaatttctgtccagtgtgtggctctatgtaacact |
41219001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 432 - 543
Target Start/End: Original strand, 41224472 - 41224583
Alignment:
| Q |
432 |
gttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatcttttcacagataccaatgaacggaacttctgtcctgtgtgt |
531 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||| |||| | |||||||| | |||||| ||| ||||||||||||||||| ||| || |
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| T |
41224472 |
gttttctgatatcattctttcagtaggaagatagtctcttgcttctgccataagatatctctgaacagatgtcaaagaacggaacttctgtccagtgcgt |
41224571 |
T |
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| Q |
532 |
ggctctatgtaa |
543 |
Q |
| |
|
|||||||||||| |
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| T |
41224572 |
ggctctatgtaa |
41224583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 543
Target Start/End: Original strand, 41226040 - 41226156
Alignment:
| Q |
430 |
ttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttg---ttgagatatcttttcacagataccaatgaacggaacttctgtcctg |
526 |
Q |
| |
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|||||||||||||| | ||| | ||||||||||||||||| ||||||| || ||||||| | || |||||||| || |||||||| ||||| | |
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| T |
41226040 |
ttgttttctgatatgattctttgagtaggaagatagtctcctgtttctcctccatttagatatcgctgaaccgataccaaagatcggaacttttgtccgg |
41226139 |
T |
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| Q |
527 |
tgtgtggctctatgtaa |
543 |
Q |
| |
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||||||||||||||||| |
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| T |
41226140 |
tgtgtggctctatgtaa |
41226156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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