View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_42 (Length: 258)
Name: NF9337_low_42
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8957774 - 8957535
Alignment:
| Q |
1 |
ataaaaaaggctagctccgtccttgtcttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaatt |
100 |
Q |
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| T |
8957774 |
ataaaaaaggctagctccgtccttgtcttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaatt |
8957675 |
T |
|
| Q |
101 |
ggaacgttattggaagaaaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8957674 |
ggaacgttattggaagaaaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccttgaaattctctatccatag |
8957575 |
T |
|
| Q |
201 |
ttccagcagccacagttatgacccaaggtgttccattgtg |
240 |
Q |
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| T |
8957574 |
ttccagcagccacagttatgacccaaggtgttccattgtg |
8957535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 8946459 - 8946539
Alignment:
| Q |
158 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattg |
238 |
Q |
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| T |
8946459 |
ccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattg |
8946539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 8946330 - 8946403
Alignment:
| Q |
29 |
tcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattgg |
102 |
Q |
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| T |
8946330 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattgg |
8946403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 34963088 - 34963307
Alignment:
| Q |
22 |
cttgtcttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttattggaagaaaat |
121 |
Q |
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||||||||||||||| | ||||||| ||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||| | | | ||| ||| |
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| T |
34963088 |
cttgtcttcacacactataatcttgcttttcacttttttcaattcataaacattgttacataaatccatgaaaacaattggaacatcttgtgtagacaat |
34963187 |
T |
|
| Q |
122 |
gttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatga |
221 |
Q |
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| T |
34963188 |
gttcctacataaagagacaatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagttataa |
34963287 |
T |
|
| Q |
222 |
cccaaggtgttccattgtgt |
241 |
Q |
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| T |
34963288 |
cccaaggtgttccattgtgt |
34963307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 25928183 - 25928102
Alignment:
| Q |
30 |
cacacacaacaatcttgtttttcac-ttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttat |
110 |
Q |
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||||||| ||||||||| |||| || ||||||||| |||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
25928183 |
cacacaccacaatcttggtttttacgttttttcaactccttaacattgtcgcataaacccataaaaacaataggaacattat |
25928102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 21687476 - 21687553
Alignment:
| Q |
27 |
cttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaa |
104 |
Q |
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||||||| || |||||||| | |||||| | || ||||| |||||||||||||| | |||||| ||||||||||||| |
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| T |
21687476 |
cttcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaa |
21687553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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