View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_43 (Length: 256)
Name: NF9337_low_43
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_43 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 8958068 - 8957821
Alignment:
| Q |
9 |
aggagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
108 |
Q |
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| T |
8958068 |
aggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
8957969 |
T |
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| Q |
109 |
gttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatga |
208 |
Q |
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| T |
8957968 |
gttttcatgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatga |
8957869 |
T |
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| Q |
209 |
tggatgcaaaactattttctgaaaagtatatgtttgtaacatttgtaa |
256 |
Q |
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| T |
8957868 |
tggatgcaaaactattttctgaaaagtatatgtttgtaacatttgtaa |
8957821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 8946009 - 8946129
Alignment:
| Q |
19 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
118 |
Q |
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| T |
8946009 |
atgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttga |
8946108 |
T |
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| Q |
119 |
aagacatgcttgcttttgaag |
139 |
Q |
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| T |
8946109 |
aagacatatttgctattgaag |
8946129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 8963072 - 8962945
Alignment:
| Q |
19 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
118 |
Q |
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| T |
8963072 |
atgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttga |
8962973 |
T |
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| Q |
119 |
aagacatgcttgcttttgaagtagagtt |
146 |
Q |
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| T |
8962972 |
aagacattttttctattgaactagagtt |
8962945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 34962792 - 34963005
Alignment:
| Q |
19 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
118 |
Q |
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| T |
34962792 |
atgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttagttccaaaaactgttttcatga |
34962891 |
T |
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| Q |
119 |
aagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaa |
218 |
Q |
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| T |
34962892 |
aagacatgcttgcaattgaag---------tagagttactactcttgatgtaagctttgacaatttcaccatttattggattaacaaggatggttgcaaa |
34962982 |
T |
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| Q |
219 |
actattttctgaaaagtatatgt |
241 |
Q |
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| T |
34962983 |
actattttgtgaatagaatatgt |
34963005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 21687162 - 21687374
Alignment:
| Q |
9 |
aggagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
108 |
Q |
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| T |
21687162 |
aggagcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaaagct |
21687261 |
T |
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| Q |
109 |
gttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatga |
208 |
Q |
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| T |
21687262 |
gttttcttgaaagacatgtttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatttactggattaataatga |
21687358 |
T |
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| Q |
209 |
tggatgcaaaactatt |
224 |
Q |
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| T |
21687359 |
tggatgggaaactatt |
21687374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 19375878 - 19375998
Alignment:
| Q |
11 |
gagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgt |
110 |
Q |
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| T |
19375878 |
gagcagtgatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgt |
19375977 |
T |
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| Q |
111 |
tttcttgaaagacatgcttgc |
131 |
Q |
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| T |
19375978 |
tttcttgaaagacatgcttgc |
19375998 |
T |
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