View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_44 (Length: 252)
Name: NF9337_low_44
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 25372553 - 25372333
Alignment:
| Q |
15 |
tttggtgttcttctcttggaaattctaagtggtagaaaagctatcgacatgatgcaatatgaagaagggaataacatagttgaatgggcagtgcctttga |
114 |
Q |
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| T |
25372553 |
tttggtgttcttctcttggaaattctaagtggtagaaaagctatcgacatgatgcaatatgaagaagggaataacatagttgaatgggcagtgcctttga |
25372454 |
T |
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| Q |
115 |
tcaaatcaggagatatatctgcaattttggatccaattcttaaaccacctcatgatcttgaagcattgaaaaagatagctaatgtagcttgtaaatgtgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25372453 |
tcaaatcaggagatatatctgcaattttggatccaattcttaaaccacctcatgatcttgaagcattgaaaaagatagctaatgtagcttgtaaatgtgt |
25372354 |
T |
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| Q |
215 |
gagaatgagaggaaaagatag |
235 |
Q |
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||||||||||||||||||||| |
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| T |
25372353 |
gagaatgagaggaaaagatag |
25372333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 42357036 - 42357250
Alignment:
| Q |
15 |
tttggtgttcttctcttggaaattctaagtggtagaaaagctatcgacatgatgcaatatgaagaagggaataacatagttgaatgggcagtgcctttga |
114 |
Q |
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||||||||||| || || |||||||||||||||||||||||||| || ||| |||||||||||||| |||||| ||| ||||| | || || || | |
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| T |
42357036 |
tttggtgttctactattagaaattctaagtggtagaaaagctattgatatg---caatatgaagaagg---taacattgttcaatggtcggttccattaa |
42357129 |
T |
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| Q |
115 |
tcaaatcaggagatatatctgcaattttggatccaattcttaaaccacctcatgatcttgaagcattgaaaaagatagctaatgtagcttgtaaatgtgt |
214 |
Q |
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| T |
42357130 |
taaaatcgggcgatatagcttcgattttagacccttgtttgaaaccaccttctgatatagaagcattgagaaggatagcaaatgttgcttgtaaatgtgt |
42357229 |
T |
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| Q |
215 |
gagaatgagaggaaaagatag |
235 |
Q |
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|||||||||||| |||||||| |
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| T |
42357230 |
gagaatgagaggtaaagatag |
42357250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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