View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_46 (Length: 251)
Name: NF9337_low_46
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_46 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 43952830 - 43953072
Alignment:
| Q |
9 |
aagcagagataagtttatataggaatcaacctccaatataatataaatattcnnnnnnngttggcattatcaatatatattctttattcgttactcttgg |
108 |
Q |
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| T |
43952830 |
aagcagagataagtttatataggaatcaacctccaatataatataaatattctttttttgttggcattatcaatatatattctttattcgttactcttgg |
43952929 |
T |
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| Q |
109 |
agcataagaagcatataacttttactattacttattgtctttgcagaggaaagaatgtaacacaacacagcttcaacagtcactgaagtgggtataaaaa |
208 |
Q |
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| T |
43952930 |
agcataagaagcatataacttttactattacttattgtctttgcagaggaaagaatgtaacacaacacagcttcaacagtcactgaagtgggtataaaaa |
43953029 |
T |
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| Q |
209 |
agaatcaagatgatagaaaaaagtatggacaaaaagaacagaa |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953030 |
agaatcaagatgatagaaaaaagtatggacaaaaagaacagaa |
43953072 |
T |
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