View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_50 (Length: 226)
Name: NF9337_low_50
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 16554124 - 16553931
Alignment:
| Q |
17 |
ggagttggaaggaactgaaattccaagcttgataatgatcacaaagcctgcacatgcaatttcttcgagtggctagaagaactagaccagtgtctgtttc |
116 |
Q |
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| T |
16554124 |
ggagttggaaggaactgaaattccaagcttgataatgatcacaaagcctgcacatgcaatttcttcgagtggctagaagaactagaccagtgtctgtttc |
16554025 |
T |
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| Q |
117 |
tatcatagtggggaccaaaagcatgcataccatagttccctaataagtatttttatagtacacacatagatttatctgacatatatcatgaagc |
210 |
Q |
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| T |
16554024 |
tatcatagtggggaccaaaagcatgcataccatagttccctaataagtatttttatagtacacacatagatttatctgacatatatcataaagc |
16553931 |
T |
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