View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_52 (Length: 225)
Name: NF9337_low_52
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 8338175 - 8337977
Alignment:
| Q |
19 |
tgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaat |
118 |
Q |
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| T |
8338175 |
tgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttaaatggatgattgtgatgttgttgttgaaat |
8338076 |
T |
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| Q |
119 |
agacatgaaaattgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactgataacaatgtggtttgttactttgatgtccatctc |
217 |
Q |
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| T |
8338075 |
agacataaaaattgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactaataacaatgtggtttgttactttgatgtgcatctc |
8337977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 21482285 - 21482146
Alignment:
| Q |
19 |
tgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaat |
118 |
Q |
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| T |
21482285 |
tgtttggagtgtaaatgatatcagagatagaggaattcaaagattgagaaaagcaattgagaaaattttgaaagggtgattgtgatgttgttgttgaaat |
21482186 |
T |
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| Q |
119 |
agacatgaaaattgttaaggttgtcaagagaaaagacaat |
158 |
Q |
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| T |
21482185 |
agacatgacaattgttaaagttatgaagagaaaagacaat |
21482146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 36100240 - 36100150
Alignment:
| Q |
67 |
aaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaa |
157 |
Q |
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| T |
36100240 |
aaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtcaagagaaaaaacaa |
36100150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 36090839 - 36090933
Alignment:
| Q |
63 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaa |
157 |
Q |
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| T |
36090839 |
tgagaaaaacaagtgagaaaattttaaatgggagattgtgatgttgttgtagaaacagacaagacaactgttatagttgtcaagagaaaaaacaa |
36090933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 34972148 - 34972199
Alignment:
| Q |
63 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttg |
114 |
Q |
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| T |
34972148 |
tgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 6838253 - 6838181
Alignment:
| Q |
86 |
ttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaat |
158 |
Q |
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| T |
6838253 |
ttgaataggtgattttgctgttgttgttgaattagacaagacaattgttaaggttgccataagaaaacacaat |
6838181 |
T |
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