View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_54 (Length: 219)
Name: NF9337_low_54
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 3455418 - 3455606
Alignment:
| Q |
19 |
agctttgccattctttctctttttctcacctgcgcttttttcaatattataaatattctcttcacaagaacaatactgcaattaagtaccttnnnnnnnn |
118 |
Q |
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| T |
3455418 |
agctttgccattctttctctttttctcacctgcgatttttttgatattataaatattttcttcacaagaacaatactgcaattaagtaccttaaaaacaa |
3455517 |
T |
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| Q |
119 |
ccaaaataacaatattcacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
207 |
Q |
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| T |
3455518 |
ccaaaataacaatatttacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
3455606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 3480121 - 3480210
Alignment:
| Q |
120 |
caaaataacaatattcacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttctgc |
209 |
Q |
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| T |
3480121 |
caaaataacaatttttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
3480210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 3479783 - 3479857
Alignment:
| Q |
19 |
agctttgccattctttctctttttctcacctgcgct--tttttcaatattataaatattctcttcacaagaacaa |
91 |
Q |
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| T |
3479783 |
agctttgccattttttctctttttctcacctgcaattgtttttcaaaattataaatattattttcacaaaaacaa |
3479857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 48694811 - 48694740
Alignment:
| Q |
136 |
acctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
207 |
Q |
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| T |
48694811 |
acctgatcggttacatccattcccatgtaattgattccaattgtttcacctgccttgctgaatacaggttct |
48694740 |
T |
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