View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_56 (Length: 218)
Name: NF9337_low_56
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 17701670 - 17701460
Alignment:
| Q |
1 |
tataaacgtcgcgcgatctctttggtgcttcacatccacgctttccatcgctttgtttcttcaaaccctattttctcggttcaattccactgctacatcg |
100 |
Q |
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| T |
17701670 |
tataaacctcgcgcgatctgtttggtgcttcacatccacgctttccatcgctttgtttcttcaaaccctattttctcagttcaattccactgctacatcg |
17701571 |
T |
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| Q |
101 |
atcatgaagagttctttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17701570 |
atcatgaagagttctttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattg |
17701471 |
T |
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| Q |
201 |
agaaacaccaa |
211 |
Q |
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||||||||||| |
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| T |
17701470 |
agaaacaccaa |
17701460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 17662413 - 17662630
Alignment:
| Q |
1 |
tataaacgtcgcgcgatctctttggtgcttcacatccacgctttccatcgctttgtttcttcaaaccctattttctcggttcaattccactgctacatcg |
100 |
Q |
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||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||| |
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| T |
17662413 |
tataaacctcgcgcgttctctttcctgcttcacatccacgctttccatcgctttgttgcttcaaaccctattttcacagttcaattcctctgctacatcg |
17662512 |
T |
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| Q |
101 |
atca-----------tgaagagttctttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatgg |
189 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
17662513 |
atcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatcatgg |
17662612 |
T |
|
| Q |
190 |
taatgaaattgagaaaca |
207 |
Q |
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|| ||||||| ||||||| |
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| T |
17662613 |
tactgaaattcagaaaca |
17662630 |
T |
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