View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9337_low_58 (Length: 215)
Name: NF9337_low_58
Description: NF9337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9337_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 51846185 - 51846384
Alignment:
| Q |
1 |
tttgcatttcatccattaatcaactcaagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaa |
100 |
Q |
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| T |
51846185 |
tttgcatttcatccattaatcaactcaagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaa |
51846284 |
T |
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| Q |
101 |
ccgatgtttattgtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtacagatgttgttca |
200 |
Q |
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| T |
51846285 |
ccgatgtttattgtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtactgatgttgttca |
51846384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 18627457 - 18627301
Alignment:
| Q |
44 |
caatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaatcattac |
143 |
Q |
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| T |
18627457 |
caatgtttgcatacaaaacaccggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaactcattac |
18627358 |
T |
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| Q |
144 |
aggaaaattcccttctcaatatcacagtaatggtaaaggtggtacagatgttgttca |
200 |
Q |
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| T |
18627357 |
aggaaaattcccttctcagtatcatagtaacggtaaaggtggaaccgatgttgttca |
18627301 |
T |
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