View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9338_1 (Length: 444)
Name: NF9338_1
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 2 - 444
Target Start/End: Original strand, 9780924 - 9781362
Alignment:
| Q |
2 |
atcatcaacttccttcactgcttcacaacaatgtggcgtagcaactgaaattgaacctagaagaaaaggatagcatggagtaagagtataaataatgtag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9780924 |
atcatcaacttccttcactgcttcacaacaatgtggcgtagcaactgaaattgaacctataagaaaaggatagcatggagtaagagtataaataatgaag |
9781023 |
T |
|
| Q |
102 |
ccaaatctatcagcttctgcaatatgtgcaacaacaatgcacaacaccaaaacgagacatgcaaccttcattcctgcctattgttttctataaaggaaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9781024 |
gcaaatctatcagcttctgcaatatgtgcaacaacaatgcacaacaccaaaacgagacatgcaaccttcattcctgcctattgttttctataaaggaaaa |
9781123 |
T |
|
| Q |
202 |
atcaaagtagaaattaaaatatgtctttgtttgaaatatttttctttcttaatttatttgctcagc-ttaaagtgagtttgttggtttatatatagaaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
9781124 |
atcaaagtagaaattaaaatatgtctttgtttggaatatttttctttgttaatttgtttgctgagctttaaagtgagtttgttggtttcaatatagaaga |
9781223 |
T |
|
| Q |
301 |
taagataataaaattgtgattttcaacattctcaaattactaactnnnnnnngaaaagacgaaaataagataagatatgaattggtatattcagagaagg |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9781224 |
taagataagaaaattgtgattttcaacattctcaagttactaaataaaaaaagaaaagacg-aaataagataagatatgaattggtatattcagagaagg |
9781322 |
T |
|
| Q |
401 |
agctagggaccatgagtattgagtagggtgctctattatgattg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9781323 |
----agggaccatgagtattgagtagggtgctctattacgattg |
9781362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University