View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9338_4 (Length: 318)
Name: NF9338_4
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 34166833 - 34167143
Alignment:
| Q |
8 |
gagatgaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
107 |
Q |
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| T |
34166833 |
gagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
34166932 |
T |
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| Q |
108 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatttaagc |
207 |
Q |
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| T |
34166933 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagc |
34167032 |
T |
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| Q |
208 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatgttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34167033 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttg |
34167132 |
T |
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| Q |
308 |
cgtcctaggca |
318 |
Q |
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| T |
34167133 |
cgtcctaggca |
34167143 |
T |
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