View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9338_low_1 (Length: 552)
Name: NF9338_low_1
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 6916168 - 6915618
Alignment:
| Q |
1 |
cttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916168 |
cttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcagg |
6916069 |
T |
|
| Q |
101 |
aagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916068 |
aagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttct |
6915969 |
T |
|
| Q |
201 |
ctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915968 |
ctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaa |
6915869 |
T |
|
| Q |
301 |
tgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttt |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915868 |
tgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttt |
6915769 |
T |
|
| Q |
401 |
tgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatgca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6915768 |
tgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatgca |
6915669 |
T |
|
| Q |
501 |
caatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatg |
551 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915668 |
caatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatg |
6915618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
117 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
216 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
|
| Q |
217 |
gctttccaactgtagcatcaacc |
239 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 15038324 - 15038438
Alignment:
| Q |
1 |
cttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcagg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
15038324 |
cttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctgacccagcagg |
15038423 |
T |
|
| Q |
101 |
aagtggttcaatata |
115 |
Q |
| |
|
|||||||||||||| |
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|
| T |
15038424 |
gagtggttcaatata |
15038438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
| Q |
386 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| |||||||||||||| |
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| T |
15040241 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa |
15040340 |
T |
|
| Q |
486 |
gtatc |
490 |
Q |
| |
|
||||| |
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|
| T |
15040341 |
gtatc |
15040345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
| Q |
309 |
tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
382 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15040064 |
tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
15040137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 550
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
| Q |
495 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
15041840 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat |
15041895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
253 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
307 |
Q |
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|||||| || |||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
| Q |
337 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
406 |
Q |
| |
|
||||||||||||||| |||||| || | |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
43895529 |
ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac |
43895598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
| Q |
337 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
406 |
Q |
| |
|
||||||||||||||| |||||| || | |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
44305953 |
ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac |
44306022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 544
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
| Q |
466 |
taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc |
544 |
Q |
| |
|
|||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| ||||| |
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|
| T |
35856932 |
taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc |
35856854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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