View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9338_low_2 (Length: 374)
Name: NF9338_low_2
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 16325199 - 16325570
Alignment:
| Q |
1 |
tagcgtatccatatgttttaccatagtgggtttgtagaagcaacaaatcatagagttactgaagcgtatggttttgatgtggttattgaattttccaaat |
100 |
Q |
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| T |
16325199 |
tagcgtatccatatgttttaccatagtgggtttgtagaagcaacaaatcatagaattactgaagcgtatggtttcgacgtggttattgaattttccaaat |
16325298 |
T |
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| Q |
101 |
gcagcttatgcttaggttctaataaagcgtcgtctcgactctttatcaataccatattagaattttaatattgttgtcttaaccctctgtttttcaataa |
200 |
Q |
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| T |
16325299 |
gcagcttatggttaggttcta-taaagcgttgtctcgactctttatcaataccatattagaattttaatattgttgtcttaatcctctgtttttcaatag |
16325397 |
T |
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| Q |
201 |
aatggaccaaataattcgaaatttgactaaaaggtaattaaaatcttactacatgttattccaaactaaatttaaaaatggatttttctgaacaacttgc |
300 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16325398 |
aatggaccaaataatttgaaatttgactaaaagataagtaaaatcttactacatgttattccaaactaaatttaaaaatggatttttctgaacaa-ttgc |
16325496 |
T |
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| Q |
301 |
ttacactagaattctaatttggtatgctaagtttggaatgggctatttatttctcctcaccctcatctattgat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16325497 |
ttacactagaattctaatttggtatgctaagtttggaatgggctatttatttctcctcaccctcatctattgat |
16325570 |
T |
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