View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9338_low_5 (Length: 332)
Name: NF9338_low_5
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 15581549 - 15581240
Alignment:
| Q |
14 |
aatttcaccacgagcatggtggtaaaaatgatcaaacaaatggagacagtgaagtttcattctaatttaaatcaattagacttaggtcatggcattcaaa |
113 |
Q |
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| T |
15581549 |
aatttcaccacgaacatggtggtaaaaatgatcaaacaaatggagacagtgaagtttcattctaatttaaatcaattagacttaggtcatggcattcaaa |
15581450 |
T |
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| Q |
114 |
cctaaacgtctacaatatgtttcgtgtgtttttgtgaaattatcaaatgcatgtgattaaacttaccatcaattacattgtaaattacttgtaaaattca |
213 |
Q |
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| T |
15581449 |
cctaaacgtctacaatatgtttcgtgtgtttttgtgaaattatcaaatgcatgtgattaaacttaccatcaattacattgtaaattacttgtaaaattca |
15581350 |
T |
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| Q |
214 |
ccatgcatgcatcacttgcttactatatataatcataatagtcttcaaagaaaggcattccaaaaatatactattatcttatctagcacattgtttcaac |
313 |
Q |
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| T |
15581349 |
ccatgcatgcatcacttggttactatatataatcatatttgtcttcaaagaaaagcattccaaaaatatactattatcttatctagcacattgtttcaac |
15581250 |
T |
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| Q |
314 |
caagtattat |
323 |
Q |
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| T |
15581249 |
caaatattat |
15581240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 314
Target Start/End: Complemental strand, 15550112 - 15549851
Alignment:
| Q |
40 |
aatgatcaaacaaatggagacagtgaagtttcattctaatttaaatcaattagacttaggtcatggcattcaaacc-taaacgtctacaatatgtttcgt |
138 |
Q |
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| T |
15550112 |
aatgatcaaacgaagggagacaatgaagtttcatattaatttaaatcaattagacttaggtc--gacattcaaaccctcaac---tatagtattttccgt |
15550018 |
T |
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| Q |
139 |
gtg-tttttgtgaaattatcaaatgcatgtgattaaacttaccatcaattacattgtaaattacttgtaaaattcaccatgcatgcatcacttgcttact |
237 |
Q |
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| T |
15550017 |
gtggtttttgtgaaattatcaaatgcatgtgcttaaac--ac--tcaattacattgtaaattactcataaaactcaccatgcattcatcactagcttac- |
15549923 |
T |
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| Q |
238 |
atatataatcataatagtcttcaaagaaaggcattccaaaaatatactattatcttatctagcacattgtttcaacc |
314 |
Q |
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| T |
15549922 |
atatataataatatttgtcttcaaagaaaggcattcgaaaaatatactatt-----atctagcacattgtttcaacc |
15549851 |
T |
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