View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9338_low_6 (Length: 250)
Name: NF9338_low_6
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_low_6 |
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| [»] scaffold1653 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35976691 - 35976931
Alignment:
| Q |
1 |
tagcagaagctgttgtgtctttgcctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaa |
100 |
Q |
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| T |
35976691 |
tagcagaagttgttgtgtctttgcctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaa |
35976790 |
T |
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| Q |
101 |
atcaacattagcagtttctgagaaacctctctttccacaactatttttaattggtgattctccgtgatcacctgcacctggaagaccgagccgtaactcg |
200 |
Q |
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| T |
35976791 |
atcaacattagcagtttctgagaaacctctctttccacaactatttttaacaggtgattctccgtgatcacctgcacctggaagaccgagtcgtaactcg |
35976890 |
T |
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| Q |
201 |
gtctcctcaaaatttatcaagctgtacttgtctctctctgc |
241 |
Q |
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| T |
35976891 |
gtctcctcaaaatttatcaagctgtacttgtctctctctgc |
35976931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1653 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold1653
Description:
Target: scaffold1653; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 774 - 905
Alignment:
| Q |
17 |
gtctttgcctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaaatcaacattagcagtt |
116 |
Q |
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| T |
774 |
gtctttgcctttgtattcagctacataacctatagttgaagaaaataaaaca--atcgtttattggagaaagattaagcttgaaatcaacattagaagat |
871 |
T |
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| Q |
117 |
tctgagaaacctctctttccacaactatttttaa |
150 |
Q |
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| T |
872 |
tctgagaaacctctctttccacaactatttttaa |
905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 1727 - 1587
Alignment:
| Q |
24 |
cctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaaatcaacattagcagtttctgaga |
123 |
Q |
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| T |
1727 |
cctttgttttcgactaaagaaaatatatttgaagaagatgaaacataatcgtttattggagaaagattat--ttcaaatcaacattagcagtttctgata |
1630 |
T |
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| Q |
124 |
aacctctctttccacaactatttttaattggtgattctccgtg |
166 |
Q |
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| T |
1629 |
aacttctctttccagaacaatttttaactgatgattcttcgtg |
1587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 1727 - 1587
Alignment:
| Q |
24 |
cctttgttttcagctacagaagctatagttgaagaagatgaagcagaatcatttataggagaaagattaagcttcaaatcaacattagcagtttctgaga |
123 |
Q |
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||||||||||| ||| |||| |||| |||||||||||||| || |||| ||||| |||||||||||| |||||||||||||||||||||||||| | |
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| T |
1727 |
cctttgttttcgactaaagaaaatatatttgaagaagatgaaacataatcgtttattggagaaagattat--ttcaaatcaacattagcagtttctgata |
1630 |
T |
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| Q |
124 |
aacctctctttccacaactatttttaattggtgattctccgtg |
166 |
Q |
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| T |
1629 |
aacttctctttccagaacaatttttaactgatgattcttcgtg |
1587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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