View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9338_low_7 (Length: 249)

Name: NF9338_low_7
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9338_low_7
NF9338_low_7
[»] chr3 (4 HSPs)
chr3 (11-249)||(16366586-16366829)
chr3 (11-123)||(16356891-16357006)
chr3 (90-206)||(41677886-41678000)
chr3 (13-51)||(26445618-26445656)
[»] chr4 (3 HSPs)
chr4 (11-249)||(895095-895337)
chr4 (11-51)||(4746799-4746839)
chr4 (16-51)||(44643064-44643099)
[»] chr6 (5 HSPs)
chr6 (28-249)||(4846085-4846306)
chr6 (11-50)||(24042027-24042066)
chr6 (11-50)||(24045342-24045381)
chr6 (11-51)||(34233387-34233427)
chr6 (11-51)||(28745823-28745863)
[»] chr1 (6 HSPs)
chr1 (11-249)||(9111818-9112058)
chr1 (14-51)||(21501770-21501807)
chr1 (11-51)||(4243026-4243066)
chr1 (11-50)||(38825907-38825946)
chr1 (11-50)||(49387988-49388027)
chr1 (11-50)||(49391276-49391315)
[»] chr8 (1 HSPs)
chr8 (68-249)||(41740163-41740347)
[»] chr7 (4 HSPs)
chr7 (11-50)||(13815405-13815444)
chr7 (87-222)||(22301456-22301592)
chr7 (11-51)||(31207096-31207136)
chr7 (11-51)||(31210487-31210527)
[»] chr2 (2 HSPs)
chr2 (9-47)||(30750185-30750223)
chr2 (11-51)||(32424598-32424638)
[»] scaffold0028 (2 HSPs)
scaffold0028 (11-51)||(109748-109787)
scaffold0028 (11-51)||(127330-127369)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 16366829 - 16366586
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaattctaaccaagtccatccaaaaataatgtttccacatgt---ttttatcatttcttaaatg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||   |||||||||||| |||||     
T  16366829 tgttgtaattttagagttttattttatttcaaaagttaattctaactaaatccatccaaaaatgatgtttccacatgttttttttatcatttcctaaata 16366730  T
Q  108 agctaaccatgactcagtatgcttacgtagtcaattaatccttaccttaattttcccaactg-aaaaatagttttactcatgtggctatttttgtggaat 206  Q
    ||||||| ||||||||  |||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||    
T  16366729 agctaactatgactcatcatgcttacttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtggaat 16366630  T
Q  207 tagt-ggcatgttctcaaaaaatatcttgggagtatatatgata 249  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  16366629 tagtgggcatgttctcacaaaatatcttgggagtatatatgata 16366586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 16357006 - 16356891
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaattctaaccaagtccatccaaaaataatgtttccacatgt---ttttatcatttcttaaatg 107  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||   |||||||||||| |||||     
T  16357006 tgttgtaattttatagttttattttatttcaaaagttaattctcactaaatccatccaaaaatgatgtttccacatgttttttttatcatttcctaaata 16356907  T
Q  108 agctaaccatgactca 123  Q
    ||||||| ||||||||    
T  16356906 agctaactatgactca 16356891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 41678000 - 41677886
Alignment:
Q  90 tttatcatttcttaaatgagctaaccatgactcagtatgcttacgtagtcaattaatccttaccttaattttcccaactgaaaaatagttttactcatgt 189  Q
    ||||||||| |  |||| |||||||| |||||  || | |||||  |||||||||| | || ||||| ||||| |||||||||||| |||||| ||||||    
T  41678000 tttatcattcccaaaataagctaaccttgacttggttttcttactaagtcaattaagcattgcctta-ttttctcaactgaaaaatggtttta-tcatgt 41677903  T
Q  190 ggctatttttgtggaat 206  Q
    |||||||||| ||||||    
T  41677902 ggctatttttatggaat 41677886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 26445656 - 26445618
Alignment:
Q  13 ttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  26445656 ttgtaattttagacttttattttatttcaaaagttaatt 26445618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 895095 - 895337
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaattctaaccaagtccatccaaaaataatgtttccacatg--tttttatcatttcttaaatga 108  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||  |||||||||||| |||||| |    
T  895095 tgttgtaattttagagttttattttatttcaaaagttaattctaactaaatccatccaaaaatgatgtttccacatgtttttttatcattttttaaataa 895194  T
Q  109 gctaaccatgactcagtatgcttacgtagtcaattaatccttaccttaattttcccaactg-aaaaatagttttactcatgtggctatttttgtggaatt 207  Q
    |||||| ||||||||  |||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  895195 gctaactatgactcatcatgcttacttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtggaatt 895294  T
Q  208 agt-ggcatgttctcaaaaaatatcttgggagtatatatgata 249  Q
    ||| |||||||||||| || |||||||||||||||||||||||    
T  895295 agtgggcatgttctcacaatatatcttgggagtatatatgata 895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 4746799 - 4746839
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4746799 tgttgtaattttagagttttattttatttcaaaagttaatt 4746839  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 44643064 - 44643099
Alignment:
Q  16 taattttagagtcttattttatttcaaaagttaatt 51  Q
    |||||||||||| |||||||||||||||||||||||    
T  44643064 taattttagagttttattttatttcaaaagttaatt 44643099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 4846306 - 4846085
Alignment:
Q  28 cttattttatttcaaaagttaattctaaccaagtccatccaaaaataatgtttccacatgtttttatcatttcttaaatgagctaaccatgactcagtat 127  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||  ||||||||| |||||||||||||| ||||||| ||||||||  ||    
T  4846306 cttattttatttcaaaagttaattctaactaaatccatccaaaaatgatgtttttacatgttttcatcatttcttaaataagctaactatgactcaacat 4846207  T
Q  128 gcttacgtagtcaattaatccttaccttaattttcccaactgaaaaatagttttactcatgtggctatttttgtggaattagtggcatgttctca-aaaa 226  Q
    |||||| ||||||||||| |||||||||||||||| || |||| ||||||||||| ||||||||||||||||||| |||||||| ||| |||||| |||     
T  4846206 gcttacttagtcaattaagccttaccttaattttctcatctgagaaatagttttattcatgtggctatttttgtgtaattagtgacat-ttctcacaaac 4846108  T
Q  227 atatcttgggagtatatatgata 249  Q
    ||||||| |||||||||||||||    
T  4846107 atatcttcggagtatatatgata 4846085  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 24042066 - 24042027
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaat 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24042066 tgttgtaattttagagttttattttatttcaaaagttaat 24042027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 24045381 - 24045342
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaat 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24045381 tgttgtaattttagagttttattttatttcaaaagttaat 24045342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 34233387 - 34233427
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  34233387 tgttgtaattttaaagttttattttatttcaaaagttaatt 34233427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 28745823 - 28745863
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  28745823 tgttgtaattttaaagttgtattttatttcaaaagttaatt 28745863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 9112058 - 9111818
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaattctaaccaagtccatccaaaaataatgtttccacatgttttt----atcatttcttaaat 106  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| || ||||| ||||||| ||||||||||||||||||    |||||||| |||||    
T  9112058 tgttgtaattttagagttttattttatttcaaa-gttaattctaactaaatccattcaaaaatgatgtttccacatgtttttttttatcatttcctaaat 9111960  T
Q  107 gagctaaccatgactcagtatgcttacgtagtcaattaatccttaccttaattttcccaactgaaaaa-tagttttactcatgtggctatttttgtggaa 205  Q
     ||||||| ||| ||||   ||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||| |  |||||||||||||||||||    
T  9111959 aagctaactatgtctcatcctgcttacttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttatt--tgtggctatttttgtggaa 9111862  T
Q  206 ttagtggcatgttctcaaaaaatatcttgggagtatatatgata 249  Q
    |||||||||||||| || ||||||| |||| |||||||||||||    
T  9111861 ttagtggcatgttcgcacaaaatatgttggaagtatatatgata 9111818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 21501807 - 21501770
Alignment:
Q  14 tgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    |||||||||||||| |||||||||||||||||||||||    
T  21501807 tgtaattttagagttttattttatttcaaaagttaatt 21501770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 4243066 - 4243026
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  4243066 tgttgtaattttaaagttttattttatttcaaaagttaatt 4243026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 38825946 - 38825907
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaat 50  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  38825946 tgttgtaattttaaagttttattttatttcaaaagttaat 38825907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 49388027 - 49387988
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaat 50  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  49388027 tgttttaattttagagttttattttatttcaaaagttaat 49387988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 49391315 - 49391276
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaat 50  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  49391315 tgttgtaattttagaattttattttatttcaaaagttaat 49391276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 41740347 - 41740163
Alignment:
Q  68 aaaaataatgtttccacatgtttttatcatttcttaaatgagctaaccatgactcagtatgcttacgtagtcaattaatccttaccttaattttcccaac 167  Q
    |||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||| ||||    
T  41740347 aaaaatgatggttccacacgtttttatcatttcctaaatgagctaaccatgactcggtatgcttacatagtcaattaaaccttaccttaatattctcaac 41740248  T
Q  168 tgaaaaata--gttttactcatgtggctatttttgtggaattagtggcatgttctca-aaaaatatcttgggagtatatatgata 249  Q
     |||||| |  |||||| | |||| |||||||||||||||||||||||||||||||| | | |||| |||||| |||||||||||    
T  41740247 cgaaaaaaaaggttttatttatgttgctatttttgtggaattagtggcatgttctcacacatatatgttgggaatatatatgata 41740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 13815405 - 13815444
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaat 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  13815405 tgttgtaattttagagttttattttatttcaaaagttaat 13815444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 22301592 - 22301456
Alignment:
Q  87 gtttttatcatttcttaaatgagctaaccatgactcagtatgcttacgtagtcaattaatccttaccttaattttcccaactgaaaaata---gttttac 183  Q
    |||||| ||| ||| |||||||||  ||||||||| |||||  |||| |||||| | || || | ||||||| ||| ||||||||||| |   ||||||     
T  22301592 gtttttctcaattcctaaatgagc--accatgacttagtatatttacttagtcagtcaagccatgccttaatcttctcaactgaaaaaaaatggttttat 22301495  T
Q  184 tcatgtggctatttttgtggaattagtggcatgttctca 222  Q
    |||||| ||||||| |||||| | |||||||||||||||    
T  22301494 tcatgttgctatttatgtggagtaagtggcatgttctca 22301456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 31207136 - 31207096
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  31207136 tgttataattttagagttttattttatttcaaaagttaatt 31207096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 31210527 - 31210487
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  31210527 tgttataattttagagttttattttatttcaaaagttaatt 31210487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 30750223 - 30750185
Alignment:
Q  9 ggtgttgtaattttagagtcttattttatttcaaaagtt 47  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  30750223 ggtgttgtaattttagagttttattttatttcaaaagtt 30750185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 32424598 - 32424638
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  32424598 tgttgtaattttagagttttattttattttaaaagttaatt 32424638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 109748 - 109787
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  109748 tgttgtaatttt-gagttttattttatttcaaaagttaatt 109787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 127330 - 127369
Alignment:
Q  11 tgttgtaattttagagtcttattttatttcaaaagttaatt 51  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  127330 tgttgtaatttt-gagttttattttatttcaaaagttaatt 127369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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